myRT

myRT report for GCA_010998655.1_ASM1099865v1

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Seq: JAAEAG010000030.1 Myxococcus sp. CA018 NODE_30_length_46409_cov_5.93311, whole genome shotgun sequence (46374 bp)
Overview 1 RT 1: 2648-15366 bp Neighborhood of RT #1 [2648, 15455] BetA BetA BetA DAP2 RVT-Retrons WD40 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 Feature: gene Location: 2648-4171 bp Feature: domain Description: BetA Location: 2663-3158 bp Feature: domain Description: BetA Location: 2663-31 58 bp Feature: domain Description: BetA Location: 3299-3602 bp Feature: domain Description: BetA Location: 3299-3602 bp Feature: domain Description: BetA Location: 3737-4151 bp Feature: domain Description: BetA Location: 3737-41 51 bp Feature: gene Location: 4317-5207 bp Feature: domain Description: DAP2 Location: 4443-5022 bp Feature: domain Description: DAP2 Location: 4443-5022 bp Feature: gene Location: 5211-6668 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5769-6411 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5769-641 1 bp Feature: gene Location: 7069-8922 bp Feature: gene Location: 8919-15455 bp Feature: domain Description: WD40 Location: 9078-9774 bp Feature: domain Description: WD40 Location: 9078-9774 bp Feature: domain Description: HEAT_2 Location: 9996-10179 bp Feature: domain Description: HEAT_2 Location: 9996-1 01 79 bp Feature: domain Description: HEAT_2 Location: 10761-11010 bp Feature: domain Description: HEAT_2 Location: 1 0761 -1 1 01 0 bp Feature: domain Description: HEAT_2 Location: 11055-11220 bp Feature: domain Description: HEAT_2 Location: 1 1 055-1 1 220 bp Feature: domain Description: HEAT_2 Location: 11250-11481 bp Feature: domain Description: HEAT_2 Location: 1 1 250-1 1 481 bp Feature: domain Description: HEAT_2 Location: 11919-12072 bp Feature: domain Description: HEAT_2 Location: 1 1 91 9-1 2072 bp Feature: domain Description: HEAT_2 Location: 12180-12342 bp Feature: domain Description: HEAT_2 Location: 1 21 80-1 2342 bp Feature: domain Description: HEAT_2 Location: 12702-12891 bp Feature: domain Description: HEAT_2 Location: 1 2702-1 2891 bp Feature: domain Description: HEAT_2 Location: 12936-13143 bp Feature: domain Description: HEAT_2 Location: 1 2936-1 31 43 bp Feature: domain Description: HEAT_2 Location: 13308-13542 bp Feature: domain Description: HEAT_2 Location: 1 3308-1 3542 bp Feature: domain Description: HEAT_2 Location: 13605-13764 bp Feature: domain Description: HEAT_2 Location: 1 3605-1 3764 bp Feature: domain Description: HEAT_2 Location: 14154-14370 bp Feature: domain Description: HEAT_2 Location: 1 41 54-1 4370 bp Feature: domain Description: HEAT_2 Location: 14883-15102 bp Feature: domain Description: HEAT_2 Location: 1 4883-1 51 02 bp Feature: domain Description: HEAT_2 Location: 15228-15366 bp Feature: domain Description: HEAT_2 Location: 1 5228-1 5366 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT BetA (COG2303), DAP2 (COG1506), RVT-Retrons, WD40 (smart00320), HEAT_2 (pfam13646)

Seq: JAAEAG010000329.1 Myxococcus sp. CA018 NODE_329_length_8686_cov_5.63664, whole genome shotgun sequence (8686 bp)
Overview 1 RT 1: 699-5631 bp Neighborhood of RT #1 [699, 5642] LPAM_1 COG4941 RVT-Retrons RNase_HI_like Feature: gene Location: 699-1367 bp Feature: domain Description: LPAM_1 Location: 888-939 bp Feature: domain Description: LPAM_1 Location: 888-939 bp Feature: gene Location: 1761-2957 bp Feature: domain Description: COG4941 Location: 1767-2937 bp Feature: domain Description: COG4941 Location: 1767-2 937 bp Feature: gene Location: 3326-4654 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3770-4424 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3770-442 4 bp Feature: gene Location: 4756-4974 bp Feature: gene Location: 5004-5642 bp Feature: domain Description: RNase_HI_like Location: 5253-5631 bp Feature: domain Description: RNase_HI_like Location: 52 53-5631 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4941 (Predicted RNA polymerase sigma factor, contains C-terminal TPR domain ), RVT-Retrons, RNase_HI_like (cd09279), LPAM_1 (pfam08139)

Seq: JAAEAG010000398.1 Myxococcus sp. CA018 NODE_398_length_5824_cov_6.02615, whole genome shotgun sequence (5824 bp)
Overview 1 RT 1: 49-3245 bp Neighborhood of RT #1 [49, 3403] RVT-GII GIIM COG3617 P63C Feature: gene Location: 49-1359 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 334-952 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 3 4-952 bp Feature: domain Description: GIIM Note: maturase Location: 1024-1246 bp Feature: domain Description: GIIM Note: maturase Location: 1024-1246 bp Feature: gene Location: 1870-2184 bp Feature: gene Location: 2627-3403 bp Feature: domain Description: COG3617 Location: 2633-2936 bp Feature: domain Description: COG3 617 Location: 263 3 -293 6 bp Feature: domain Description: P63C Location: 2978-3245 bp Feature: domain Description: P63 C Location: 2978-3 245 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3617 (Prophage antirepressor ), P63C (pfam10546), RVT-GII, GIIM (pfam08388)

Seq: JAAEAG010000062.1 Myxococcus sp. CA018 NODE_62_length_33223_cov_6.40697, whole genome shotgun sequence (33223 bp)
Overview 1 RT 1: 11883-18751 bp Neighborhood of RT #1 [11883, 18930] RVT-Retrons COG3791 EpmB Feature: gene Location: 11883-13748 bp Feature: gene Location: 13745-15343 bp Feature: gene Location: 15522-16805 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 15987-16590 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 15987-16590 bp Feature: gene Location: 16814-17233 bp Feature: domain Description: COG3791 Location: 16838-17195 bp Feature: domain Description: COG3791 Location: 16838-17195 bp Feature: gene Location: 17602-18930 bp Feature: domain Description: EpmB Location: 17665-18751 bp Feature: domain Description: EpmB Location: 17665-18751 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, COG3791 (Uncharacterized conserved protein ), EpmB (COG1509)

Seq: JAAEAG010000682.1 Myxococcus sp. CA018 NODE_683_length_421_cov_0.843537, whole genome shotgun sequence (421 bp)
Overview 1 RT 1: 1-400 bp Neighborhood of RT #1 [1, 420] RVT-CRISPR-like Feature: gene Location: 1-420 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 127-400 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 127-400 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR