myRT

myRT report for GCA_011008755.1_ASM1100875v1

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Seq: JAAIWJ010000012.1 Escherichia coli strain EC21 STEC1_S1__trimmed_contig_12, whole genome shotgun sequence (9055 bp)
Overview 1 RT 1: 4812-6957 bp Neighborhood of RT #1 [4812, 6957] CspC RVT-Retrons Feature: gene Location: 4812-4973 bp Feature: gene Location: 5161-5364 bp Feature: domain Description: CspC Location: 5164-5359 bp Feature: domain Description: CspC Location: 51 64-5359 bp Feature: gene Location: 5369-6508 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5513-6068 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 551 3-6068 bp Feature: gene Location: 6530-6712 bp Feature: gene Location: 6802-6957 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CspC (COG1278), RVT-Retrons

Seq: JAAIWJ010000170.1 Escherichia coli strain EC21 STEC1_S1__trimmed_contig_170, whole genome shotgun sequence (8895 bp)
Overview 1 RT 1: 7129-8894 bp Neighborhood of RT #1 [7129, 8893] SLATT_5 RVT-UG17 Feature: gene Location: 7129-7272 bp Feature: gene Location: 7515-8078 bp Feature: domain Description: SLATT_5 Location: 7533-8061 bp Feature: domain Description: SLATT_5 Location: 7533-8061 bp Feature: gene Location: 8078-8893 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 8306-8894 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 8306-8894 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SLATT_5 (pfam18160), RVT-UG17

Seq: JAAIWJ010000021.1 Escherichia coli strain EC21 STEC1_S1__trimmed_contig_21, whole genome shotgun sequence (16811 bp)
Overview 1 RT 1: 8827-11741 bp Neighborhood of RT #1 [8827, 11806] RVT-GII GIIM PHA02517 Feature: gene Location: 8827-8970 bp Feature: gene Location: 8995-9198 bp Feature: gene Location: 9266-10789 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9539-10271 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 953 9-10271 bp Feature: domain Description: GIIM Note: maturase Location: 10346-10544 bp Feature: domain Description: GIIM Note: maturase Location: 103 46-10544 bp Feature: gene Location: 10743-11168 bp Feature: gene Location: 11381-11806 bp Feature: domain Description: PHA02517 Location: 11405-11741 bp Feature: domain Description: PHA02517 Location: 11405-11741 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed)

Seq: JAAIWJ010000095.1 Escherichia coli strain EC21 STEC1_S1__trimmed_contig_95, whole genome shotgun sequence (21086 bp)
Overview 1 RT 1: 9755-13092 bp Neighborhood of RT #1 [9755, 13092] YhhI YhhI YhhI RVT-GII GIIM Feature: gene Location: 9755-10891 bp Feature: domain Description: YhhI Location: 9758-10121 bp Feature: domain Description: YhhI Location: 9758-10121 bp Feature: domain Description: YhhI Location: 10178-10532 bp Feature: domain Description: YhhI Location: 10178-10532 bp Feature: domain Description: YhhI Location: 10550-10793 bp Feature: domain Description: YhhI Location: 10550-10793 bp Feature: gene Location: 11116-11265 bp Feature: gene Location: 11338-12588 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11542-12199 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1154 2-12199 bp Feature: domain Description: GIIM Note: maturase Location: 12280-12502 bp Feature: domain Description: GIIM Note: maturase Location: 12280-12502 bp Feature: gene Location: 12612-12899 bp Feature: gene Location: 12952-13092 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YhhI (COG5433), RVT-GII, GIIM (pfam08388)