myRT

myRT report for GCA_011009535.1_ASM1100953v1

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Seq: QZCE01000002.1 Leptolyngbyaceae cyanobacterium CCMR0082 Scaffold_1b, whole genome shotgun sequence (6749354 bp)
Overview 1 RT 1: 3216718-3222449 bp Neighborhood of RT #1 [3216718, 3222619] RVT-UG4 TIGR02436 RimL Feature: gene Location: 3216718-3218925 bp Feature: gene Location: 3219242-3220387 bp Feature: gene Location: 3220423-3220965 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 3220429-3220753 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 3220429-3220753 bp Feature: gene Location: 3221098-3221463 bp Feature: domain Description: TIGR02436 Location: 3221119-3221452 bp Feature: domain Description: TIGR02436 Location: 3221 1 1 9-3221 452 bp Feature: gene Location: 3221579-3222619 bp Feature: domain Description: RimL Location: 3222032-3222449 bp Feature: domain Description: RimL Location: 3222032-3222449 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG4, TIGR02436 (four helix bundle protein), RimL (COG1670)

Seq: QZCE01000003.1 Leptolyngbyaceae cyanobacterium CCMR0082 Scaffold_2, whole genome shotgun sequence (57461 bp)
Overview 1 RT 1: 14703-23299 bp 2 RT 2: 52819-57411 bp Neighborhood of RT #1 [14703, 23299] PBP1_ABC_ligand_binding_like_9 TraI_TIGR TraI_TIGR group_II_RT_mat RVT-UG19 Neighborhood of RT #2 [52819, 57411] PinE Zn_ribbon_recom Recombinase RVT-GII GIIM McrA Feature: gene Location: 14703-17303 bp Feature: domain Description: PBP1_ABC_ligand_binding_like_9 Location: 16287-17220 bp Feature: domain Description: PBP1_ABC_ligand_binding_like_9 Location: 162 87-172 2 0 bp Feature: gene Location: 17544-19511 bp Feature: domain Description: TraI_TIGR Location: 17556-18090 bp Feature: domain Description: TraI_TIGR Location: 17556-18090 bp Feature: domain Description: TraI_TIGR Location: 18105-18879 bp Feature: domain Description: TraI_TIGR Location: 18105-18879 bp Feature: gene Location: 19765-21873 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 19912-20107 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 19912 -2 0107 bp Feature: RT Description: RVT-UG19 Note: UG19 RT Location: 20176-20674 bp Feature: RT Description: RVT-UG19 Note: UG19 RT Location: 2 0176-2 0674 bp Feature: gene Location: 21946-22227 bp Feature: gene Location: 22628-23299 bp Feature: gene Location: 52819-54903 bp Feature: domain Description: PinE Location: 52858-53512 bp Feature: domain Description: PinE Location: 52 858-53512 bp Feature: domain Description: Zn_ribbon_recom Location: 53818-53986 bp Feature: domain Description: Zn_ribbon_recom Location: 53818-53986 bp Feature: domain Description: Recombinase Location: 54541-54643 bp Feature: domain Description: Recombinase Location: 54541-54643 bp Feature: gene Location: 55347-55517 bp Feature: gene Location: 55647-56840 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 55662-56262 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 55662 -562 62 bp Feature: domain Description: GIIM Note: maturase Location: 56319-56463 bp Feature: domain Description: GIIM Note: maturase Location: 56319-56463 bp Feature: domain Description: McrA Location: 56580-56817 bp Feature: domain Description: McrA Location: 56580-56817 bp Feature: gene Location: 56853-56996 bp Feature: gene Location: 57037-57411 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PBP1_ABC_ligand_binding_like_9, TraI_TIGR (TIGR02760), group_II_RT_mat (TIGR04416), RVT-UG19, PinE (COG1961), Zn_ribbon_recom (pfam13408), Recombinase (pfam07508), RVT-GII, GIIM (pfam08388), McrA (COG4058)