myRT

myRT report for GCA_011009555.1_ASM1100955v1

Download annotations/find similar RTs

Seq: QXHD01000001.1 Leptolyngbyaceae cyanobacterium CCMR0081 Scaffold_1, whole genome shotgun sequence (125377 bp)
Overview 1 RT 1: 62309-66946 bp Neighborhood of RT #1 [62309, 66946] DUF5372 RVT-GII GIIM HNHc PLN00021 Feature: gene Location: 62309-62953 bp Feature: gene Location: 63017-63316 bp Feature: domain Description: DUF5372 Location: 63077-63221 bp Feature: domain Description: DUF5372 Location: 63077-63221 bp Feature: gene Location: 63292-64602 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 63307-63922 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 63307-63922 bp Feature: domain Description: GIIM Note: maturase Location: 63997-64228 bp Feature: domain Description: GIIM Note: maturase Location: 63997-64228 bp Feature: domain Description: HNHc Note: nucleases Location: 64441-64597 bp Feature: domain Description: HNHc Note: nucleases Location: 64441 -64597 bp Feature: gene Location: 64796-66463 bp Feature: domain Description: PLN00021 Location: 65009-65336 bp Feature: domain Description: PLN00021 Location: 65009-65336 bp Feature: gene Location: 66503-66946 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF5372 (pfam17342), RVT-GII, GIIM (pfam08388), HNHc (smart00507), PLN00021 (chlorophyllase)

Seq: QXHD01000011.1 Leptolyngbyaceae cyanobacterium CCMR0081 Scaffold_10, whole genome shotgun sequence (12236 bp)
Overview 1 RT 1: 8561-12132 bp Neighborhood of RT #1 [8561, 12233] PhdYeFM_antitox PhdYeFM_antitox RVT_N RVT-GII Recombinase Zn_ribbon_recom Recombinase MerR_1 Feature: gene Location: 8561-8956 bp Feature: domain Description: PhdYeFM_antitox Location: 8579-8711 bp Feature: domain Description: PhdYeFM_antitox Location: 8579-8711 bp Feature: domain Description: PhdYeFM_antitox Location: 8759-8876 bp Feature: domain Description: PhdYeFM_antitox Location: 8759-8876 bp Feature: gene Location: 9958-10092 bp Feature: gene Location: 10173-10565 bp Feature: domain Description: RVT_N Location: 10218-10464 bp Feature: domain Description: RVT_N Location: 102 18-10464 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10512-10557 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10512 -10557 bp Feature: gene Location: 10659-12233 bp Feature: domain Description: Recombinase Location: 10728-11091 bp Feature: domain Description: Recombinase Location: 1072 8-11091 bp Feature: domain Description: Zn_ribbon_recom Location: 11148-11316 bp Feature: domain Description: Zn_ribbon_recom Location: 11148-11316 bp Feature: domain Description: Recombinase Location: 11871-11973 bp Feature: domain Description: Recombinase Location: 11871-11973 bp Feature: domain Description: MerR_1 Location: 12027-12132 bp Feature: domain Description: MerR_1 Location: 12 02 7-12 132 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PhdYeFM_antitox (pfam02604), RVT_N (pfam13655), RVT-GII, Recombinase (pfam07508), Zn_ribbon_recom (pfam13408), MerR_1 (pfam13411)

Seq: QXHD01000016.1 Leptolyngbyaceae cyanobacterium CCMR0081 Scaffold_15, whole genome shotgun sequence (2023 bp)
Overview 1 RT 1: 19-1957 bp Neighborhood of RT #1 [19, 1995] RVT-CRISPR Cas1_I-II-III Feature: gene Location: 19-1995 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 208-817 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 208-817 bp Feature: domain Description: Cas1_I-II-III Location: 994-1957 bp Feature: domain Description: Cas1_I-II-III Location: 994-1957 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR, Cas1_I-II-III (cl00656)

Seq: QXHD01000004.1 Leptolyngbyaceae cyanobacterium CCMR0081 Scaffold_3b, whole genome shotgun sequence (7693661 bp)
Overview 1 RT 1: 404610-407658 bp 2 RT 2: 2769847-2774419 bp 3 RT 3: 6751742-6756531 bp 4 RT 4: 7421935-7426460 bp Neighborhood of RT #1 [404610, 407658] Peptidases_S8_13 TIGR02436 RVT-UG4 Neighborhood of RT #2 [2769847, 2774538] AzoR MATE_like_7 RVT-GII GIIM SF1_C_UvrD Neighborhood of RT #3 [6751742, 6756548] YfmG YfmG RVT-DGRs Avd_like Neighborhood of RT #4 [7421935, 7426462] DUF4113 PolY_Pol_V_umuC RVT-GII GIIM HNHc psbF Feature: gene Location: 404610-405122 bp Feature: domain Description: Peptidases_S8_13 Location: 404634-404892 bp Feature: domain Description: Peptidases_S8_13 Location: 4 04 634 -4 04 892 bp Feature: gene Location: 405200-405565 bp Feature: domain Description: TIGR02436 Location: 405221-405554 bp Feature: domain Description: TIGR024 36 Location: 4 05221-4 05554 bp Feature: gene Location: 405636-406247 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 405702-406035 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 4 05702-4 06035 bp Feature: gene Location: 406283-407428 bp Feature: gene Location: 407431-407658 bp Feature: gene Location: 2769847-2770218 bp Feature: domain Description: AzoR Location: 2770012-2770204 bp Feature: domain Description: AzoR Location: 2770012-2770204 bp Feature: gene Location: 2770244-2771665 bp Feature: domain Description: MATE_like_7 Location: 2770313-2771645 bp Feature: domain Description: MATE_like_7 Location: 2770313-277164 5 bp Feature: gene Location: 2772246-2772683 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2772252-2772651 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2772252-2772651 bp Feature: gene Location: 2772667-2773089 bp Feature: domain Description: GIIM Note: maturase Location: 2772697-2772898 bp Feature: domain Description: GIIM Note: maturase Location: 2772697-2772898 bp Feature: gene Location: 2773372-2774538 bp Feature: domain Description: SF1_C_UvrD Location: 2773945-2774419 bp Feature: domain Description: SF1_C_UvrD Location: 277394 5-2774 4 19 bp Feature: gene Location: 6751742-6754369 bp Feature: domain Description: YfmG Location: 6753617-6754346 bp Feature: domain Description: YfmG Location: 6753617-6754 34 6 bp Feature: gene Location: 6754452-6755294 bp Feature: domain Description: YfmG Location: 6754533-6755271 bp Feature: domain Description: YfmG Location: 6754 533-6755271 bp Feature: gene Location: 6755367-6755876 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 6755376-6755646 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 6755376-675564 6 bp Feature: gene Location: 6755893-6756201 bp Feature: gene Location: 6756198-6756548 bp Feature: domain Description: Avd_like Location: 6756225-6756531 bp Feature: domain Description: Avd_like Location: 6756225-6756531 bp Feature: gene Location: 7421935-7422333 bp Feature: domain Description: DUF4113 Location: 7422175-7422322 bp Feature: domain Description: DUF4 113 Location: 74 22175-74 22322 bp Feature: gene Location: 7422417-7423073 bp Feature: domain Description: PolY_Pol_V_umuC Location: 7422423-7423068 bp Feature: domain Description: PolY_Pol_V_umuC Location: 74 224 23-74 23068 bp Feature: gene Location: 7423264-7424610 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7423279-7423885 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 74 23279-74 23885 bp Feature: domain Description: GIIM Note: maturase Location: 7423939-7424173 bp Feature: domain Description: GIIM Note: maturase Location: 74 23939-74 24 173 bp Feature: domain Description: HNHc Note: nucleases Location: 7424398-7424554 bp Feature: domain Description: HNHc Note: nucleases Location: 74 24 398-74 24 554 bp Feature: gene Location: 7424633-7425472 bp Feature: gene Location: 7426328-7426462 bp Feature: domain Description: psbF Location: 7426331-7426460 bp Feature: domain Description: psbF Location: 74 26331-74 264 60 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Peptidases_S8_13 (cd07496), TIGR02436 (four helix bundle protein), RVT-UG4, AzoR (COG1182), MATE_like_7 (cd13133), RVT-GII, GIIM (pfam08388), SF1_C_UvrD (cd18807), YfmG (COG1262), RVT-DGRs
Avd_like (cd16376), DUF4113 (pfam13438), PolY_Pol_V_umuC (cd01700), HNHc (smart00507), psbF (PRK02561)