myRT

myRT report for GCA_011009765.1_ASM1100976v1

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Seq: SDQX01000005.1 Lactobacillus reuteri strain D4 contig00005, whole genome shotgun sequence (104606 bp)
Overview 1 RT 1: 2055-6816 bp Neighborhood of RT #1 [2055, 6821] nuc_hydro_CaPnhB 3beta-17beta-HSD_like_SDR_c RVT-GII GIIM YfcA Feature: gene Location: 2055-3017 bp Feature: domain Description: nuc_hydro_CaPnhB Location: 2070-2985 bp Feature: domain Description: nuc_hydro_CaPnhB Location: 2070-2985 bp Feature: gene Location: 3309-4064 bp Feature: domain Description: 3beta-17beta-HSD_like_SDR_c Location: 3318-4062 bp Feature: domain Description: 3beta-1 7beta-HSD_like_SDR_c Location: 331 8-4062 bp Feature: gene Location: 4164-5546 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4482-5100 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4482-51 00 bp Feature: domain Description: GIIM Note: maturase Location: 5154-5382 bp Feature: domain Description: GIIM Note: maturase Location: 51 54-5382 bp Feature: gene Location: 5750-5971 bp Feature: gene Location: 6036-6821 bp Feature: domain Description: YfcA Location: 6048-6816 bp Feature: domain Description: YfcA Location: 6048-681 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT nuc_hydro_CaPnhB (cd02650), 3beta-17beta-HSD_like_SDR_c (cd05341), RVT-GII, GIIM (pfam08388), YfcA (COG0730)

Seq: SDQX01000039.1 Lactobacillus reuteri strain D4 contig00211, whole genome shotgun sequence (9905 bp)
Overview 1 RT 1: 932-7729 bp Neighborhood of RT #1 [932, 7992] RVT-AbiA HEPN_AbiA_CTD RmlD_sub_bind MATE_Wzx_like Feature: gene Location: 932-1675 bp Feature: gene Location: 1672-2730 bp Feature: gene Location: 2866-4758 bp Feature: RT Description: RVT-AbiA Note: AbiA RT Location: 3247-3727 bp Feature: RT Description: RVT-AbiA Note: AbiA RT Location: 32 47-372 7 bp Feature: domain Description: HEPN_AbiA_CTD Location: 4321-4729 bp Feature: domain Description: HEPN_AbiA_CTD Location: 432 1-472 9 bp Feature: gene Location: 5290-6135 bp Feature: domain Description: RmlD_sub_bind Location: 5299-6124 bp Feature: domain Description: RmlD_sub_bind Location: 52 99-612 4 bp Feature: gene Location: 6529-7992 bp Feature: domain Description: MATE_Wzx_like Location: 6556-7729 bp Feature: domain Description: MATE_Wzx_like Location: 6556-772 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-AbiA, HEPN_AbiA_CTD (pfam18732), RmlD_sub_bind (pfam04321), MATE_Wzx_like (cd13128)

Seq: SDQX01000049.1 Lactobacillus reuteri strain D4 contig00358, whole genome shotgun sequence (4094 bp)
Overview 1 RT 1: 1-3907 bp Neighborhood of RT #1 [1, 3954] MBG MBG Gram_pos_anchor RVT-GII GIIM DDE_Tnp_ISL3 zf-ISL3 HTH_Tnp_ISL3 Feature: gene Location: 1-651 bp Feature: domain Description: MBG Location: 4-118 bp Feature: domain Description: MBG Location: 4-118 bp Feature: domain Description: MBG Location: 160-415 bp Feature: domain Description: MBG Location: 160-415 bp Feature: domain Description: Gram_pos_anchor Location: 529-646 bp Feature: domain Description: Gram_pos_anchor Location: 529-646 bp Feature: gene Location: 1246-2628 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1564-2182 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1564-2182 bp Feature: domain Description: GIIM Note: maturase Location: 2236-2464 bp Feature: domain Description: GIIM Note: maturase Location: 223 6-2464 bp Feature: gene Location: 2860-3381 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 2878-3370 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 2878-3 3 70 bp Feature: gene Location: 3430-3954 bp Feature: domain Description: zf-ISL3 Location: 3607-3727 bp Feature: domain Description: zf-ISL3 Location: 3 607-3 727 bp Feature: domain Description: HTH_Tnp_ISL3 Location: 3769-3907 bp Feature: domain Description: HTH_Tnp_ISL3 Location: 3 769-3 907 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MBG (pfam17883), Gram_pos_anchor (pfam00746), RVT-GII, GIIM (pfam08388), DDE_Tnp_ISL3 (pfam01610), zf-ISL3 (pfam14690), HTH_Tnp_ISL3 (pfam13542)

Seq: SDQX01000056.1 Lactobacillus reuteri strain D4 contig00436, whole genome shotgun sequence (2272 bp)
Overview 1 RT 1: 93-2269 bp Neighborhood of RT #1 [93, 2269] RVT-GII GIIM Feature: gene Location: 93-1616 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 366-1098 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 366-1098 bp Feature: domain Description: GIIM Note: maturase Location: 1173-1371 bp Feature: domain Description: GIIM Note: maturase Location: 1173-1371 bp Feature: gene Location: 1910-2269 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: SDQX01000076.1 Lactobacillus reuteri strain D4 contig00503, whole genome shotgun sequence (1204 bp)
Overview 1 RT 1: 1-1201 bp Neighborhood of RT #1 [1, 1203] RVT-GII GIIM Feature: gene Location: 1-1203 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 355-970 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35 5 -970 bp Feature: domain Description: GIIM Note: maturase Location: 1027-1201 bp Feature: domain Description: GIIM Note: maturase Location: 1027-1201 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: SDQX01000092.1 Lactobacillus reuteri strain D4 contig00542, whole genome shotgun sequence (614 bp)
Overview 1 RT 1: 3-612 bp Neighborhood of RT #1 [3, 611] RVT-GII Feature: gene Location: 3-611 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 222-612 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 222-6 12 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: SDQX01000097.1 Lactobacillus reuteri strain D4 contig00547, whole genome shotgun sequence (498 bp)
Overview 1 RT 1: 3-495 bp Neighborhood of RT #1 [3, 497] RVT-GII GIIM Feature: gene Location: 3-497 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-267 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-267 bp Feature: domain Description: GIIM Note: maturase Location: 321-495 bp Feature: domain Description: GIIM Note: maturase Location: 321-495 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)