myRT

myRT report for GCA_011028205.1_ASM1102820v1

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Seq: JAAJSH010000111.1 Escherichia coli strain ECM_45 NODE_111_length_2272_cov_121.203, whole genome shotgun sequence (2272 bp)
Overview 1 RT 1: 1-1935 bp Neighborhood of RT #1 [1, 2180] RVT-GII GIIM Feature: gene Location: 1-363 bp Feature: gene Location: 657-2180 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1662 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1 662 bp Feature: domain Description: GIIM Note: maturase Location: 1737-1935 bp Feature: domain Description: GIIM Note: maturase Location: 1 737-1 935 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JAAJSH010000011.1 Escherichia coli strain ECM_45 NODE_11_length_137247_cov_45.6061, whole genome shotgun sequence (137247 bp)
Overview 1 RT 1: 127748-133779 bp Neighborhood of RT #1 [127748, 133779] AbiEii AbiEi_3_N AbiEi_3 RVT-UG5 nitrilase Phage_ASH Feature: gene Location: 127748-128668 bp Feature: domain Description: AbiEii Location: 127790-128531 bp Feature: domain Description: AbiEii Location: 12 7790-12 8531 bp Feature: gene Location: 128655-129458 bp Feature: domain Description: AbiEi_3_N Location: 128688-128949 bp Feature: domain Description: AbiEi_3_N Location: 12 8688-12 8949 bp Feature: domain Description: AbiEi_3 Location: 128961-129417 bp Feature: domain Description: AbiEi_3 Location: 12 8961-12 9417 bp Feature: gene Location: 129753-132962 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 130281-130770 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 1302 81-130770 bp Feature: domain Description: nitrilase Location: 132276-132873 bp Feature: domain Description: nitrilase Location: 132 2 76-132 873 bp Feature: gene Location: 133123-133263 bp Feature: domain Description: Phage_ASH Location: 133150-133243 bp Feature: domain Description: Phage_ASH Location: 133150-1332 43 bp Feature: gene Location: 133309-133779 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AbiEii (pfam08843), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), RVT-UG5, nitrilase (cl11424), Phage_ASH (pfam10554)

Seq: JAAJSH010000041.1 Escherichia coli strain ECM_45 NODE_41_length_46104_cov_49.6343, whole genome shotgun sequence (46104 bp)
Overview 1 RT 1: 26007-30290 bp Neighborhood of RT #1 [26007, 30298] RVT-GII RVT-GII GIIM YesM Feature: gene Location: 26007-26912 bp Feature: gene Location: 27050-27241 bp Feature: gene Location: 27398-27937 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27728-27806 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27728-27806 bp Feature: gene Location: 27965-28486 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27971-28253 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27971-28253 bp Feature: domain Description: GIIM Note: maturase Location: 28301-28481 bp Feature: domain Description: GIIM Note: maturase Location: 283 01-28481 bp Feature: gene Location: 28808-28996 bp Feature: gene Location: 29036-30298 bp Feature: domain Description: YesM Location: 29549-30290 bp Feature: domain Description: YesM Location: 29549-3 0290 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), YesM (COG2972)