myRT

myRT report for GCA_011028265.1_ASM1102826v1

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Seq: JAAJSL010000014.1 Escherichia coli strain ECM_40 NODE_14_length_116585_cov_10.6191, whole genome shotgun sequence (116585 bp)
Overview 1 RT 1: 24393-27448 bp Neighborhood of RT #1 [24393, 27448] RVT-GII RVT-GII GIIM Feature: gene Location: 24393-25298 bp Feature: gene Location: 25436-25627 bp Feature: gene Location: 25784-26323 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26114-26192 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 261 1 4-261 92 bp Feature: gene Location: 26351-26872 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26357-26639 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26357-26639 bp Feature: domain Description: GIIM Note: maturase Location: 26687-26867 bp Feature: domain Description: GIIM Note: maturase Location: 26687-26867 bp Feature: gene Location: 26971-27150 bp Feature: gene Location: 27260-27448 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JAAJSL010000019.1 Escherichia coli strain ECM_40 NODE_19_length_86776_cov_11.615, whole genome shotgun sequence (86776 bp)
Overview 1 RT 1: 35067-38949 bp Neighborhood of RT #1 [35067, 38954] rph pyrE RVT-Retrons slmA dut Feature: gene Location: 35067-35783 bp Feature: domain Description: rph Location: 35070-35778 bp Feature: domain Description: rph Location: 35070-35778 bp Feature: gene Location: 35834-36490 bp Feature: domain Description: pyrE Location: 35852-36485 bp Feature: domain Description: pyrE Location: 35852 -36485 bp Feature: gene Location: 36788-37747 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 36923-37472 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3692 3-37472 bp Feature: gene Location: 37793-38389 bp Feature: domain Description: slmA Location: 37799-38375 bp Feature: domain Description: slmA Location: 37799-38375 bp Feature: gene Location: 38496-38954 bp Feature: domain Description: dut Location: 38502-38949 bp Feature: domain Description: dut Location: 38502 -38949 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rph (PRK00173), pyrE (TIGR00336), RVT-Retrons, slmA (PRK09480), dut (TIGR00576)

Seq: JAAJSL010000076.1 Escherichia coli strain ECM_40 NODE_76_length_2560_cov_40.8722, whole genome shotgun sequence (2560 bp)
Overview 1 RT 1: 103-2494 bp Neighborhood of RT #1 [103, 2559] RVT-GII GIIM PHA02517 Feature: gene Location: 103-1626 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 376-1108 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 76-1108 bp Feature: domain Description: GIIM Note: maturase Location: 1183-1381 bp Feature: domain Description: GIIM Note: maturase Location: 1183 -13 81 bp Feature: gene Location: 2218-2559 bp Feature: domain Description: PHA02517 Location: 2221-2494 bp Feature: domain Description: PHA02517 Location: 2221-2494 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed)