myRT

myRT report for GCA_011029445.1_ASM1102944v1

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Seq: JAAJRX010000013.1 Escherichia coli strain ECM_57 NODE_13_length_127646_cov_33.3704, whole genome shotgun sequence (127646 bp)
Overview 1 RT 1: 7713-11071 bp 2 RT 2: 35454-38509 bp Neighborhood of RT #1 [7713, 11136] InsE PHA02517 RVT-GII GIIM PHA02517 Neighborhood of RT #2 [35454, 38509] RVT-GII RVT-GII GIIM Feature: gene Location: 7713-8063 bp Feature: domain Description: InsE Location: 7722-8010 bp Feature: domain Description: InsE Location: 7722-801 0 bp Feature: gene Location: 8168-8614 bp Feature: domain Description: PHA02517 Location: 8171-8612 bp Feature: domain Description: PHA0251 7 Location: 81 71 -861 2 bp Feature: gene Location: 8731-10254 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9004-9736 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9004-9736 bp Feature: domain Description: GIIM Note: maturase Location: 9811-10009 bp Feature: domain Description: GIIM Note: maturase Location: 981 1 -1 0009 bp Feature: gene Location: 10208-10633 bp Feature: gene Location: 10846-11136 bp Feature: domain Description: PHA02517 Location: 10852-11071 bp Feature: domain Description: PHA0251 7 Location: 1 0852-1 1 071 bp Feature: gene Location: 35454-36359 bp Feature: gene Location: 36497-36688 bp Feature: gene Location: 36845-37384 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37175-37253 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 371 75-37253 bp Feature: gene Location: 37412-37933 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37418-37700 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3741 8-37700 bp Feature: domain Description: GIIM Note: maturase Location: 37748-37928 bp Feature: domain Description: GIIM Note: maturase Location: 37748-37928 bp Feature: gene Location: 38032-38211 bp Feature: gene Location: 38321-38509 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: JAAJRX010000019.1 Escherichia coli strain ECM_57 NODE_19_length_86897_cov_34.908, whole genome shotgun sequence (86897 bp)
Overview 1 RT 1: 35067-38949 bp Neighborhood of RT #1 [35067, 38954] rph pyrE RVT-Retrons slmA dut Feature: gene Location: 35067-35783 bp Feature: domain Description: rph Location: 35070-35778 bp Feature: domain Description: rph Location: 35070-35778 bp Feature: gene Location: 35834-36490 bp Feature: domain Description: pyrE Location: 35852-36485 bp Feature: domain Description: pyrE Location: 35852 -36485 bp Feature: gene Location: 36788-37747 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 36923-37472 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3692 3-37472 bp Feature: gene Location: 37793-38389 bp Feature: domain Description: slmA Location: 37799-38375 bp Feature: domain Description: slmA Location: 37799-38375 bp Feature: gene Location: 38496-38954 bp Feature: domain Description: dut Location: 38502-38949 bp Feature: domain Description: dut Location: 38502 -38949 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rph (PRK00173), pyrE (TIGR00336), RVT-Retrons, slmA (PRK09480), dut (TIGR00576)

Seq: JAAJRX010000026.1 Escherichia coli strain ECM_57 NODE_26_length_43166_cov_77.7353, whole genome shotgun sequence (43166 bp)
Overview 1 RT 1: 19062-23672 bp Neighborhood of RT #1 [19062, 23677] RVT-GII Intron_maturas2 HNHc psiB Feature: gene Location: 19062-19244 bp Feature: gene Location: 19473-19682 bp Feature: gene Location: 19817-21718 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20084-20915 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20084-20915 bp Feature: domain Description: Intron_maturas2 Location: 21029-21287 bp Feature: domain Description: Intron_maturas2 Location: 21029-21287 bp Feature: domain Description: HNHc Note: nucleases Location: 21461-21623 bp Feature: domain Description: HNHc Note: nucleases Location: 21461-21623 bp Feature: gene Location: 21946-23190 bp Feature: gene Location: 23243-23677 bp Feature: domain Description: psiB Location: 23246-23672 bp Feature: domain Description: psiB Location: 23 246-23 672 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), psiB (PRK13701)