myRT

myRT report for GCA_011029505.1_ASM1102950v1

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Seq: JAAJRZ010000028.1 Escherichia coli strain ECM_55 NODE_28_length_52849_cov_56.119, whole genome shotgun sequence (52849 bp)
Overview 1 RT 1: 51-3068 bp Neighborhood of RT #1 [51, 3068] DUF1380 RVT_N RVT-GII GIIM HNHc Feature: gene Location: 51-473 bp Feature: domain Description: DUF1380 Location: 54-357 bp Feature: domain Description: DUF1 380 Location: 54-357 bp Feature: gene Location: 525-866 bp Feature: gene Location: 939-2606 bp Feature: domain Description: RVT_N Location: 987-1224 bp Feature: domain Description: RVT_N Location: 987-1 224 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1275-1917 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 275-1 91 7 bp Feature: domain Description: GIIM Note: maturase Location: 1968-2202 bp Feature: domain Description: GIIM Note: maturase Location: 1 968-2202 bp Feature: domain Description: HNHc Note: nucleases Location: 2412-2571 bp Feature: domain Description: HNHc Note: nucleases Location: 241 2-2571 bp Feature: gene Location: 2532-2759 bp Feature: gene Location: 2886-3068 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1380 (pfam07128), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: JAAJRZ010000005.1 Escherichia coli strain ECM_55 NODE_5_length_236370_cov_41.1326, whole genome shotgun sequence (236370 bp)
Overview 1 RT 1: 1440-4910 bp Neighborhood of RT #1 [1440, 5017] Arm-DNA-bind_3 RVT-Retrons PRK09678 Feature: gene Location: 1440-1742 bp Feature: domain Description: Arm-DNA-bind_3 Location: 1449-1701 bp Feature: domain Description: Arm-DNA-bind_3 Location: 1449-1701 bp Feature: gene Location: 1926-2171 bp Feature: gene Location: 2197-3129 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2299-2893 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 2 99-2 893 bp Feature: gene Location: 3131-4117 bp Feature: gene Location: 4745-5017 bp Feature: domain Description: PRK09678 Location: 4754-4910 bp Feature: domain Description: PRK09678 Location: 4754-4910 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Arm-DNA-bind_3 (pfam13356), RVT-Retrons, PRK09678 (DNA-binding transcriptional regulator; Provisional)

Seq: JAAJRZ010000085.1 Escherichia coli strain ECM_55 NODE_85_length_2272_cov_247.58, whole genome shotgun sequence (2272 bp)
Overview 1 RT 1: 93-2269 bp Neighborhood of RT #1 [93, 2269] RVT-GII GIIM Feature: gene Location: 93-1616 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 366-1098 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 66-1098 bp Feature: domain Description: GIIM Note: maturase Location: 1173-1371 bp Feature: domain Description: GIIM Note: maturase Location: 1173 -13 71 bp Feature: gene Location: 1910-2269 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JAAJRZ010000009.1 Escherichia coli strain ECM_55 NODE_9_length_177071_cov_40.9679, whole genome shotgun sequence (177071 bp)
Overview 1 RT 1: 148736-153019 bp Neighborhood of RT #1 [148736, 153027] RVT-GII RVT-GII GIIM YesM Feature: gene Location: 148736-149641 bp Feature: gene Location: 149779-149970 bp Feature: gene Location: 150127-150666 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 150457-150535 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1504 57-150535 bp Feature: gene Location: 150694-151215 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 150700-150982 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 150700-150982 bp Feature: domain Description: GIIM Note: maturase Location: 151030-151210 bp Feature: domain Description: GIIM Note: maturase Location: 151030-151210 bp Feature: gene Location: 151537-151725 bp Feature: gene Location: 151765-153027 bp Feature: domain Description: YesM Location: 152278-153019 bp Feature: domain Description: YesM Location: 152278-153019 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), YesM (COG2972)