myRT

myRT report for GCA_011030155.1_ASM1103015v1

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Seq: JAAJRI010000013.1 Escherichia coli strain ECM_75 NODE_13_length_130384_cov_37.3374, whole genome shotgun sequence (130384 bp)
Overview 1 RT 1: 89135-92200 bp 2 RT 2: 115567-119888 bp Neighborhood of RT #1 [89135, 92200] RVT-GII GIIM RVT-GII Neighborhood of RT #2 [115567, 119941] PHA02517 RVT-GII GIIM PHA02517 InsE Feature: gene Location: 89135-89305 bp Feature: gene Location: 89443-89622 bp Feature: gene Location: 89721-90242 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 89727-90009 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 89727-90009 bp Feature: domain Description: GIIM Note: maturase Location: 90057-90237 bp Feature: domain Description: GIIM Note: maturase Location: 90057-90237 bp Feature: gene Location: 90270-90809 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 90600-90678 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 90600-90678 bp Feature: gene Location: 90840-91037 bp Feature: gene Location: 91295-92200 bp Feature: gene Location: 115567-116391 bp Feature: gene Location: 116518-116808 bp Feature: domain Description: PHA02517 Location: 116524-116743 bp Feature: domain Description: PHA0251 7 Location: 1 1 6524-1 1 6743 bp Feature: gene Location: 117400-118923 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 117673-118405 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 7673-1 1 8405 bp Feature: domain Description: GIIM Note: maturase Location: 118480-118678 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 8480-1 1 8678 bp Feature: gene Location: 119100-119486 bp Feature: domain Description: PHA02517 Location: 119103-119484 bp Feature: domain Description: PHA0251 7 Location: 1 1 91 03-1 1 9484 bp Feature: gene Location: 119591-119941 bp Feature: domain Description: InsE Location: 119600-119888 bp Feature: domain Description: InsE Location: 1 1 9600-1 1 9888 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963)

Seq: JAAJRI010000083.1 Escherichia coli strain ECM_75 NODE_83_length_2669_cov_118.911, whole genome shotgun sequence (2669 bp)
Overview 1 RT 1: 155-1961 bp Neighborhood of RT #1 [155, 2056] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 155-2056 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 422-1253 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42 2 -12 53 bp Feature: domain Description: Intron_maturas2 Location: 1367-1625 bp Feature: domain Description: Intron_maturas2 Location: 1367-162 5 bp Feature: domain Description: HNHc Note: nucleases Location: 1799-1961 bp Feature: domain Description: HNHc Note: nucleases Location: 1799-1961 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: JAAJRI010000009.1 Escherichia coli strain ECM_75 NODE_9_length_207604_cov_36.8107, whole genome shotgun sequence (207604 bp)
Overview 1 RT 1: 157510-161392 bp Neighborhood of RT #1 [157510, 161397] rph pyrE RVT-Retrons slmA dut Feature: gene Location: 157510-158226 bp Feature: domain Description: rph Location: 157513-158221 bp Feature: domain Description: rph Location: 157513 -158221 bp Feature: gene Location: 158277-158933 bp Feature: domain Description: pyrE Location: 158295-158928 bp Feature: domain Description: pyrE Location: 158295-158928 bp Feature: gene Location: 159231-160190 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 159366-159915 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1593 66-159915 bp Feature: gene Location: 160236-160832 bp Feature: domain Description: slmA Location: 160242-160818 bp Feature: domain Description: slmA Location: 160242-160818 bp Feature: gene Location: 160939-161397 bp Feature: domain Description: dut Location: 160945-161392 bp Feature: domain Description: dut Location: 160945-1613 92 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rph (PRK00173), pyrE (TIGR00336), RVT-Retrons, slmA (PRK09480), dut (TIGR00576)