myRT

myRT report for GCA_011030195.1_ASM1103019v1

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Seq: JAAJRJ010000121.1 Escherichia coli strain ECM_74 NODE_121_length_2272_cov_52.3459, whole genome shotgun sequence (2272 bp)
Overview 1 RT 1: 93-2269 bp Neighborhood of RT #1 [93, 2269] RVT-GII GIIM Feature: gene Location: 93-1616 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 366-1098 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 366-1 098 bp Feature: domain Description: GIIM Note: maturase Location: 1173-1371 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 73-1 371 bp Feature: gene Location: 1910-2269 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JAAJRJ010000041.1 Escherichia coli strain ECM_74 NODE_41_length_35061_cov_21.0287, whole genome shotgun sequence (35061 bp)
Overview 1 RT 1: 6424-12455 bp Neighborhood of RT #1 [6424, 12455] AbiEii AbiEi_3_N AbiEi_3 RVT-UG5 nitrilase Phage_ASH Feature: gene Location: 6424-7344 bp Feature: domain Description: AbiEii Location: 6466-7207 bp Feature: domain Description: AbiEii Location: 6466-72 07 bp Feature: gene Location: 7331-8134 bp Feature: domain Description: AbiEi_3_N Location: 7364-7625 bp Feature: domain Description: AbiEi_3_N Location: 7364-762 5 bp Feature: domain Description: AbiEi_3 Location: 7637-8093 bp Feature: domain Description: AbiEi_3 Location: 7637-8093 bp Feature: gene Location: 8429-11638 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 8957-9446 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 8957-9446 bp Feature: domain Description: nitrilase Location: 10952-11549 bp Feature: domain Description: nitrilase Location: 10952 -11549 bp Feature: gene Location: 11799-11939 bp Feature: domain Description: Phage_ASH Location: 11826-11919 bp Feature: domain Description: Phage_ASH Location: 1182 6-11919 bp Feature: gene Location: 11985-12455 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AbiEii (pfam08843), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), RVT-UG5, nitrilase (cl11424), Phage_ASH (pfam10554)

Seq: JAAJRJ010000004.1 Escherichia coli strain ECM_74 NODE_4_length_193519_cov_22.0987, whole genome shotgun sequence (193519 bp)
Overview 1 RT 1: 3-4885 bp Neighborhood of RT #1 [3, 4887] RVT-Retrons TIR_2 PRK10597 prfC Feature: gene Location: 3-272 bp Feature: gene Location: 857-2461 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1148-1739 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1148-173 9 bp Feature: domain Description: TIR_2 Location: 2066-2354 bp Feature: domain Description: TIR_2 Location: 2066-23 54 bp Feature: gene Location: 2821-3081 bp Feature: domain Description: PRK10597 Location: 2824-3064 bp Feature: domain Description: PRK10597 Location: 2824-3 064 bp Feature: gene Location: 3301-4887 bp Feature: domain Description: prfC Location: 3319-4885 bp Feature: domain Description: prfC Location: 3 3 19-4885 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, TIR_2 (pfam13676), PRK10597 (DNA damage-inducible protein I; Provisional), prfC (TIGR00503)

Seq: JAAJRJ010000063.1 Escherichia coli strain ECM_74 NODE_63_length_16521_cov_23.1342, whole genome shotgun sequence (16521 bp)
Overview 1 RT 1: 10142-14124 bp Neighborhood of RT #1 [10142, 14150] Asparaginase_2 RVT-GII DcuC Feature: gene Location: 10142-11173 bp Feature: domain Description: Asparaginase_2 Location: 10232-11165 bp Feature: domain Description: Asparaginase_2 Location: 10232-11165 bp Feature: gene Location: 11500-11649 bp Feature: gene Location: 11697-12143 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12003-12105 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12003-12105 bp Feature: gene Location: 12365-12736 bp Feature: gene Location: 12789-14150 bp Feature: domain Description: DcuC Location: 12792-14124 bp Feature: domain Description: DcuC Location: 12792-14 124 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Asparaginase_2 (pfam01112), RVT-GII, DcuC (TIGR00771)

Seq: JAAJRJ010000064.1 Escherichia coli strain ECM_74 NODE_64_length_16001_cov_39.1481, whole genome shotgun sequence (16001 bp)
Overview 1 RT 1: 99-4752 bp Neighborhood of RT #1 [99, 4752] PRK10276 RVT-GII Intron_maturas2 HNHc PRK13704 Feature: gene Location: 99-476 bp Feature: domain Description: PRK10276 Location: 138-429 bp Feature: domain Description: PRK10276 Location: 138-429 bp Feature: gene Location: 490-699 bp Feature: gene Location: 834-2735 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1101-1932 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1101-1932 bp Feature: domain Description: Intron_maturas2 Location: 2046-2304 bp Feature: domain Description: Intron_maturas2 Location: 2046-2304 bp Feature: domain Description: HNHc Note: nucleases Location: 2478-2640 bp Feature: domain Description: HNHc Note: nucleases Location: 2478-2640 bp Feature: gene Location: 2963-4159 bp Feature: domain Description: PRK13704 Location: 3806-4151 bp Feature: domain Description: PRK13704 Location: 3806-415 1 bp Feature: gene Location: 4156-4752 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PRK13704 (plasmid SOS inhibition protein A; Provisional)