myRT

myRT report for GCA_011030265.1_ASM1103026v1

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Seq: JAAJRN010000030.1 Escherichia coli strain ECM_70 NODE_30_length_53877_cov_38.6121, whole genome shotgun sequence (53877 bp)
Overview 1 RT 1: 25555-28620 bp Neighborhood of RT #1 [25555, 28620] RVT-GII GIIM RVT-GII Feature: gene Location: 25555-25725 bp Feature: gene Location: 25863-26042 bp Feature: gene Location: 26141-26662 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26147-26429 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 261 47-26429 bp Feature: domain Description: GIIM Note: maturase Location: 26477-26657 bp Feature: domain Description: GIIM Note: maturase Location: 26477-26657 bp Feature: gene Location: 26690-27229 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27020-27098 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27020-27098 bp Feature: gene Location: 27260-27457 bp Feature: gene Location: 27715-28620 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JAAJRN010000041.1 Escherichia coli strain ECM_70 NODE_41_length_38716_cov_66.9282, whole genome shotgun sequence (38716 bp)
Overview 1 RT 1: 115-3421 bp Neighborhood of RT #1 [115, 3543] RVT_N RVT-GII GIIM HNHc DUF1380 Feature: gene Location: 115-378 bp Feature: gene Location: 952-2619 bp Feature: domain Description: RVT_N Location: 1000-1237 bp Feature: domain Description: RVT_N Location: 1000-12 37 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1288-1930 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 88-1930 bp Feature: domain Description: GIIM Note: maturase Location: 1981-2215 bp Feature: domain Description: GIIM Note: maturase Location: 1981-2 2 15 bp Feature: domain Description: HNHc Note: nucleases Location: 2425-2584 bp Feature: domain Description: HNHc Note: nucleases Location: 2 42 5-2 584 bp Feature: gene Location: 2734-3069 bp Feature: gene Location: 3121-3543 bp Feature: domain Description: DUF1380 Location: 3124-3421 bp Feature: domain Description: DUF1380 Location: 312 4-342 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF1380 (pfam07128)

Seq: JAAJRN010000008.1 Escherichia coli strain ECM_70 NODE_8_length_163016_cov_33.4, whole genome shotgun sequence (163016 bp)
Overview 1 RT 1: 127745-133776 bp Neighborhood of RT #1 [127745, 133776] AbiEii AbiEi_3_N AbiEi_3 RVT-UG5 nitrilase Phage_ASH Feature: gene Location: 127745-128665 bp Feature: domain Description: AbiEii Location: 127787-128528 bp Feature: domain Description: AbiEii Location: 127787-128528 bp Feature: gene Location: 128652-129455 bp Feature: domain Description: AbiEi_3_N Location: 128685-128946 bp Feature: domain Description: AbiEi_3 _N Location: 128685-128946 bp Feature: domain Description: AbiEi_3 Location: 128958-129414 bp Feature: domain Description: AbiEi_3 Location: 128958-129414 bp Feature: gene Location: 129750-132959 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 130278-130767 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 13 0278-13 0767 bp Feature: domain Description: nitrilase Location: 132273-132870 bp Feature: domain Description: nitrilase Location: 13 2273 -13 2870 bp Feature: gene Location: 133120-133260 bp Feature: domain Description: Phage_ASH Location: 133147-133240 bp Feature: domain Description: Phage_ASH Location: 13 3 147-13 3 240 bp Feature: gene Location: 133306-133776 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AbiEii (pfam08843), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), RVT-UG5, nitrilase (cl11424), Phage_ASH (pfam10554)