myRT

myRT report for GCA_011032045.1_ASM1103204v1

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Seq: JAAKBT010000024.1 Escherichia coli strain CAP38 contig00024, whole genome shotgun sequence (60157 bp)
Overview 1 RT 1: 51524-57071 bp Neighborhood of RT #1 [51524, 57071] DUF1706 DUF4400 RVT-GII GIIM conj_TOL_TraD Feature: gene Location: 51524-52036 bp Feature: domain Description: DUF1706 Location: 51527-52022 bp Feature: domain Description: DUF1 706 Location: 51 527-52022 bp Feature: gene Location: 52229-52417 bp Feature: gene Location: 53118-54287 bp Feature: domain Description: DUF4400 Location: 53286-53730 bp Feature: domain Description: DUF4400 Location: 53286-53730 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53730-53910 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53730-5391 0 bp Feature: domain Description: GIIM Note: maturase Location: 53988-54210 bp Feature: domain Description: GIIM Note: maturase Location: 53988-5421 0 bp Feature: gene Location: 54280-56376 bp Feature: domain Description: conj_TOL_TraD Location: 54301-56236 bp Feature: domain Description: conj_TOL_TraD Location: 54301 -56236 bp Feature: gene Location: 56373-57071 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1706 (pfam08020), DUF4400 (pfam14348), RVT-GII, GIIM (pfam08388), conj_TOL_TraD (TIGR03754)

Seq: JAAKBT010000030.1 Escherichia coli strain CAP38 contig00030, whole genome shotgun sequence (40803 bp)
Overview 1 RT 1: 25583-34893 bp Neighborhood of RT #1 [25583, 34952] RMtype1_S_StySKI-TRD2-CR2_like RMtype1_S_StySKI-TRD2-CR2_like HsdM RVT-UG1 RT_Bac_retron_II Arm-DNA-bind_3 INT_P4_C Feature: gene Location: 25583-26905 bp Feature: domain Description: RMtype1_S_StySKI-TRD2-CR2_like Location: 25949-26204 bp Feature: domain Description: RMtype1_S_StySKI-TRD2 -CR2 _like Location: 2 5949-2 62 04 bp Feature: domain Description: RMtype1_S_StySKI-TRD2-CR2_like Location: 26240-26819 bp Feature: domain Description: RMtype1_S_StySKI-TRD2 -CR2 _like Location: 2 62 40-2 6819 bp Feature: gene Location: 26905-29265 bp Feature: domain Description: HsdM Location: 26929-28333 bp Feature: domain Description: HsdM Location: 2 692 9-2 8333 bp Feature: gene Location: 29473-33249 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 30091-30598 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 30091-30598 bp Feature: domain Description: RT_Bac_retron_II Location: 32392-32560 bp Feature: domain Description: RT_Bac_retron_II Location: 32 392 -32 560 bp Feature: gene Location: 33362-33538 bp Feature: gene Location: 33543-34952 bp Feature: domain Description: Arm-DNA-bind_3 Location: 33660-33927 bp Feature: domain Description: Arm-DNA-bind_3 Location: 33660-3392 7 bp Feature: domain Description: INT_P4_C Location: 34344-34893 bp Feature: domain Description: INT_P4_C Location: 34344-34893 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RMtype1_S_StySKI-TRD2-CR2_like (cd17259), HsdM (COG0286), RVT-UG1, RT_Bac_retron_II (cd03487), Arm-DNA-bind_3 (pfam13356), INT_P4_C (cd00801)

Seq: JAAKBT010000055.1 Escherichia coli strain CAP38 contig00055, whole genome shotgun sequence (8375 bp)
Overview 1 RT 1: 3-3729 bp Neighborhood of RT #1 [3, 3815] DDE_Tnp_IS66 DDE_Tnp_IS66_C RVT-GII GIIM RVT-GII CdiI_3 Feature: gene Location: 3-1028 bp Feature: domain Description: DDE_Tnp_IS66 Location: 24-873 bp Feature: domain Description: DDE_Tnp_IS66 Location: 24-873 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 894-1002 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 894-1002 bp Feature: gene Location: 1691-2461 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1694-2108 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1694-2108 bp Feature: domain Description: GIIM Note: maturase Location: 2159-2324 bp Feature: domain Description: GIIM Note: maturase Location: 2159-23 24 bp Feature: gene Location: 2500-2982 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2821-2908 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2821-2908 bp Feature: gene Location: 3269-3418 bp Feature: gene Location: 3429-3815 bp Feature: domain Description: CdiI_3 Location: 3453-3729 bp Feature: domain Description: CdiI_3 Location: 3 453 -3 729 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), RVT-GII, GIIM (pfam08388), CdiI_3 (pfam18616)