myRT

myRT report for GCA_011032225.1_ASM1103222v1

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Seq: JAAKCA010000017.1 Escherichia coli strain CAP31 contig00017, whole genome shotgun sequence (110875 bp)
Overview 1 RT 1: 101477-110814 bp Neighborhood of RT #1 [101477, 110873] RMtype1_S_StySKI-TRD2-CR2_like RMtype1_S_StySKI-TRD2-CR2_like HsdM RVT-UG1 RT_Bac_retron_II Arm-DNA-bind_3 INT_P4_C Feature: gene Location: 101477-102799 bp Feature: domain Description: RMtype1_S_StySKI-TRD2-CR2_like Location: 101843-102098 bp Feature: domain Description: RMtype1 _S_StySKI-TRD2-CR2_like Location: 1 01 843-1 02098 bp Feature: domain Description: RMtype1_S_StySKI-TRD2-CR2_like Location: 102134-102713 bp Feature: domain Description: RMtype1 _S_StySKI-TRD2-CR2_like Location: 1 021 34-1 0271 3 bp Feature: gene Location: 102799-105159 bp Feature: domain Description: HsdM Location: 102823-104227 bp Feature: domain Description: HsdM Location: 1 02823-1 04227 bp Feature: gene Location: 105367-109143 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 105985-106492 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 1 05985-1 06492 bp Feature: domain Description: RT_Bac_retron_II Location: 108286-108454 bp Feature: domain Description: RT_Bac_retron_II Location: 1 08286-1 08454 bp Feature: gene Location: 109256-109432 bp Feature: gene Location: 109437-110873 bp Feature: domain Description: Arm-DNA-bind_3 Location: 109581-109848 bp Feature: domain Description: Arm-DNA-bind_3 Location: 1 09581 -1 09848 bp Feature: domain Description: INT_P4_C Location: 110265-110814 bp Feature: domain Description: INT_P4_C Location: 1 1 0265-1 1 081 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RMtype1_S_StySKI-TRD2-CR2_like (cd17259), HsdM (COG0286), RVT-UG1, RT_Bac_retron_II (cd03487), Arm-DNA-bind_3 (pfam13356), INT_P4_C (cd00801)

Seq: JAAKCA010000030.1 Escherichia coli strain CAP31 contig00030, whole genome shotgun sequence (60165 bp)
Overview 1 RT 1: 3087-8620 bp Neighborhood of RT #1 [3087, 8634] conj_TOL_TraD DUF4400 RVT-GII GIIM DUF1706 Feature: gene Location: 3087-3785 bp Feature: gene Location: 3782-5878 bp Feature: domain Description: conj_TOL_TraD Location: 3803-5738 bp Feature: domain Description: conj_TOL_TraD Location: 3803-5738 bp Feature: gene Location: 5871-7040 bp Feature: domain Description: DUF4400 Location: 6039-6483 bp Feature: domain Description: DUF4400 Location: 6039-6483 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6483-6663 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6483-6663 bp Feature: domain Description: GIIM Note: maturase Location: 6741-6963 bp Feature: domain Description: GIIM Note: maturase Location: 6741-6963 bp Feature: gene Location: 7560-7832 bp Feature: gene Location: 8122-8634 bp Feature: domain Description: DUF1706 Location: 8125-8620 bp Feature: domain Description: DUF1706 Location: 812 5-862 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT conj_TOL_TraD (TIGR03754), DUF4400 (pfam14348), RVT-GII, GIIM (pfam08388), DUF1706 (pfam08020)

Seq: JAAKCA010000075.1 Escherichia coli strain CAP31 contig00075, whole genome shotgun sequence (3505 bp)
Overview 1 RT 1: 1-2586 bp Neighborhood of RT #1 [1, 2672] RVT-GII GIIM RVT-GII CdiI_3 Feature: gene Location: 1-213 bp Feature: gene Location: 548-1318 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 551-965 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 551-965 bp Feature: domain Description: GIIM Note: maturase Location: 1016-1181 bp Feature: domain Description: GIIM Note: maturase Location: 1016-1181 bp Feature: gene Location: 1357-1839 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1678-1765 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1678-1765 bp Feature: gene Location: 2126-2275 bp Feature: gene Location: 2286-2672 bp Feature: domain Description: CdiI_3 Location: 2310-2586 bp Feature: domain Description: CdiI_3 Location: 23 10-2586 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), CdiI_3 (pfam18616)