myRT

myRT report for GCA_011032695.1_ASM1103269v1

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Seq: JAAKCY010000003.1 Escherichia coli strain CAP06 contig00003, whole genome shotgun sequence (270991 bp)
Overview 1 RT 1: 225161-230805 bp Neighborhood of RT #1 [225161, 230805] P Q RVT-Retrons Feature: gene Location: 225161-226927 bp Feature: domain Description: P Location: 225188-226922 bp Feature: domain Description: P Location: 2251 88-226922 bp Feature: gene Location: 226927-227955 bp Feature: domain Description: Q Location: 226933-227950 bp Feature: domain Description: Q Location: 226933-227950 bp Feature: gene Location: 227971-228945 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 228133-228685 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2281 33-228685 bp Feature: gene Location: 229095-230000 bp Feature: gene Location: 230470-230805 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT P (PHA02535), Q (PHA02536), RVT-Retrons

Seq: JAAKCY010000049.1 Escherichia coli strain CAP06 contig00049, whole genome shotgun sequence (18390 bp)
Overview 1 RT 1: 10336-14408 bp Neighborhood of RT #1 [10336, 14410] RVT_N RVT-GII GIIM HNHc DUF1380 Antirestrict Feature: gene Location: 10336-10668 bp Feature: gene Location: 10920-11102 bp Feature: gene Location: 11382-13049 bp Feature: RT Description: RVT_N Location: 11430-11667 bp Feature: RT Description: RVT_N Location: 11430-11667 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11718-12360 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11718-12 360 bp Feature: domain Description: GIIM Note: maturase Location: 12411-12645 bp Feature: domain Description: GIIM Note: maturase Location: 12 411-12 645 bp Feature: domain Description: HNHc Note: nucleases Location: 12855-13014 bp Feature: domain Description: HNHc Note: nucleases Location: 12 855-13014 bp Feature: gene Location: 13516-13938 bp Feature: domain Description: DUF1380 Location: 13519-13813 bp Feature: domain Description: DUF1380 Location: 13519-13813 bp Feature: gene Location: 13985-14410 bp Feature: domain Description: Antirestrict Location: 14120-14408 bp Feature: domain Description: Antirestrict Location: 1412 0-14408 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF1380 (pfam07128), Antirestrict (pfam03230)

Seq: JAAKCY010000060.1 Escherichia coli strain CAP06 contig00060, whole genome shotgun sequence (6608 bp)
Overview 1 RT 1: 3963-6556 bp Neighborhood of RT #1 [3963, 6556] CdiI_3 RVT-GII RVT-GII GIIM Feature: gene Location: 3963-4349 bp Feature: domain Description: CdiI_3 Location: 3987-4263 bp Feature: domain Description: CdiI_3 Location: 3 987-4263 bp Feature: gene Location: 4495-4689 bp Feature: gene Location: 4797-5279 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5118-5205 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5118-5205 bp Feature: gene Location: 5318-6088 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5321-5735 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53 21-573 5 bp Feature: domain Description: GIIM Note: maturase Location: 5786-5951 bp Feature: domain Description: GIIM Note: maturase Location: 5786-5951 bp Feature: gene Location: 6338-6556 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CdiI_3 (pfam18616), RVT-GII, GIIM (pfam08388)

Seq: JAAKCY010000072.1 Escherichia coli strain CAP06 contig00072, whole genome shotgun sequence (2622 bp)
Overview 1 RT 1: 1-2470 bp Neighborhood of RT #1 [1, 2526] RVT_N RVT-GII YkfC HNHc Feature: gene Location: 1-159 bp Feature: gene Location: 640-780 bp Feature: gene Location: 802-2526 bp Feature: RT Description: RVT_N Location: 859-1096 bp Feature: RT Description: RVT_N Location: 859-1096 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1147-1795 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 114 7-1795 bp Feature: domain Description: YkfC Location: 1927-2083 bp Feature: domain Description: YkfC Location: 1927-2083 bp Feature: domain Description: HNHc Note: nucleases Location: 2311-2470 bp Feature: domain Description: HNHc Note: nucleases Location: 2311-24 70 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507)