myRT

myRT report for GCA_011039195.1_ASM1103919v1

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Seq: JAAKEM010000027.1 Dysgonomonas sp. ZJ709 Scaffold27_1, whole genome shotgun sequence (46147 bp)
Overview 1 RT 1: 4756-9293 bp Neighborhood of RT #1 [4756, 9379] Bac_Flav_CT_J RVT-GII Intron_maturas2 HNHc COG3415 DDE_3 Feature: gene Location: 4756-5748 bp Feature: domain Description: Bac_Flav_CT_J Location: 4762-5725 bp Feature: domain Description: Bac_Flav_CT_J Location: 4762-5725 bp Feature: gene Location: 5842-6417 bp Feature: gene Location: 6414-8225 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6678-7500 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6678-7500 bp Feature: domain Description: Intron_maturas2 Location: 7599-7878 bp Feature: domain Description: Intron_maturas2 Location: 7599-7878 bp Feature: domain Description: HNHc Note: nucleases Location: 8052-8199 bp Feature: domain Description: HNHc Note: nucleases Location: 8052-81 99 bp Feature: gene Location: 8328-8837 bp Feature: domain Description: COG3415 Location: 8421-8823 bp Feature: domain Description: COG341 5 Location: 8421 -8823 bp Feature: gene Location: 8978-9379 bp Feature: domain Description: DDE_3 Location: 8993-9293 bp Feature: domain Description: DDE_3 Location: 8993-9293 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Bac_Flav_CT_J (TIGR03782), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), COG3415 (Transposase ), DDE_3 (pfam13358)

Seq: JAAKEM010000028.1 Dysgonomonas sp. ZJ709 Scaffold28_1, whole genome shotgun sequence (44562 bp)
Overview 1 RT 1: 11318-18956 bp Neighborhood of RT #1 [11318, 18956] RVT-UG24 pseT Feature: gene Location: 11318-12991 bp Feature: gene Location: 13077-13751 bp Feature: gene Location: 13744-17025 bp Feature: RT Description: RVT-UG24 Note: UG24 RT Location: 14302-14749 bp Feature: RT Description: RVT-UG2 4 Note: UG2 4 RT Location: 14302 -14749 bp Feature: gene Location: 17163-18080 bp Feature: domain Description: pseT Location: 17184-18078 bp Feature: domain Description: pseT Location: 17184-18078 bp Feature: gene Location: 18081-18956 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG24, pseT (PHA02530)

Seq: JAAKEM010000042.1 Dysgonomonas sp. ZJ709 Scaffold42_1, whole genome shotgun sequence (21407 bp)
Overview 1 RT 1: 6477-10671 bp Neighborhood of RT #1 [6477, 10673] PRK07726 RVT-GII GIIM Toprim_Crpt DUF1896 Feature: gene Location: 6477-8261 bp Feature: domain Description: PRK07726 Location: 6480-8229 bp Feature: domain Description: PRK07726 Location: 6480-8229 bp Feature: gene Location: 8410-8607 bp Feature: gene Location: 8770-10038 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8974-9631 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8974-963 1 bp Feature: domain Description: GIIM Note: maturase Location: 9721-9931 bp Feature: domain Description: GIIM Note: maturase Location: 9721-993 1 bp Feature: gene Location: 10251-10463 bp Feature: domain Description: Toprim_Crpt Location: 10275-10449 bp Feature: domain Description: Toprim_Crpt Location: 10275-10449 bp Feature: gene Location: 10485-10673 bp Feature: domain Description: DUF1896 Location: 10488-10671 bp Feature: domain Description: DUF1896 Location: 10488-10671 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK07726 (DNA topoisomerase 3), RVT-GII, GIIM (pfam08388), Toprim_Crpt (pfam13342), DUF1896 (pfam08989)

Seq: JAAKEM010000069.1 Dysgonomonas sp. ZJ709 Scaffold69_1, whole genome shotgun sequence (2524 bp)
Overview 1 RT 1: 515-2381 bp Neighborhood of RT #1 [515, 2407] RVT-GII Intron_maturas2 HNHc Feature: gene Location: 515-2407 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 860-1679 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 860-1679 bp Feature: domain Description: Intron_maturas2 Location: 1754-2144 bp Feature: domain Description: Intron_maturas2 Location: 1754 -214 4 bp Feature: domain Description: HNHc Note: nucleases Location: 2237-2381 bp Feature: domain Description: HNHc Note: nucleases Location: 2237-2381 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)