myRT

myRT report for GCA_011043325.1_ASM1104332v1

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Seq: DQZL01000648.1 TPA_asm: Thioploca sp. isolate HyVt-18 Ga0136651_10004480, whole genome shotgun sequence (7660 bp)
Overview 1 RT 1: 1977-7255 bp Neighborhood of RT #1 [1977, 7255] COG2452 RVT_N RVT-GII GIIM HNHc InsQ Feature: gene Location: 1977-2327 bp Feature: domain Description: COG2452 Location: 1995-2283 bp Feature: domain Description: COG2452 Location: 1 995-2283 bp Feature: gene Location: 2384-2569 bp Feature: gene Location: 2893-4710 bp Feature: domain Description: RVT_N Location: 3007-3253 bp Feature: domain Description: RVT_N Location: 3007-3253 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3316-3952 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 331 6-3952 bp Feature: domain Description: GIIM Note: maturase Location: 4060-4294 bp Feature: domain Description: GIIM Note: maturase Location: 4060-4294 bp Feature: domain Description: HNHc Note: nucleases Location: 4480-4645 bp Feature: domain Description: HNHc Note: nucleases Location: 4480-4645 bp Feature: gene Location: 4707-6173 bp Feature: domain Description: InsQ Location: 5130-6144 bp Feature: domain Description: InsQ Location: 51 30-61 44 bp Feature: gene Location: 6308-7255 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG2452 (Predicted site-specific integrase-resolvase ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), InsQ (COG0675)

Seq: DQZL01000440.1 TPA_asm: Thioploca sp. isolate HyVt-18 Ga0136651_10039421, whole genome shotgun sequence (2569 bp)
Overview 1 RT 1: 3-2106 bp Neighborhood of RT #1 [3, 2165] RVT-UG4 RVT-UG4 Feature: gene Location: 3-467 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 12-462 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 12 -462 bp Feature: gene Location: 603-791 bp Feature: gene Location: 1062-1664 bp Feature: gene Location: 1941-2165 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 1947-2106 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 1947-2 106 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG4