myRT

myRT report for GCA_011043455.1_ASM1104345v1

Download annotations/find similar RTs

Seq: DQWX01000172.1 TPA_asm: Beggiatoa sp. isolate HyVt-12 Ga0136651_10000644, whole genome shotgun sequence (19132 bp)
Overview 1 RT 1: 2217-5754 bp Neighborhood of RT #1 [2217, 5754] AAA-ATPase_like RVT-UG4 Feature: gene Location: 2217-2537 bp Feature: domain Description: AAA-ATPase_like Location: 2268-2514 bp Feature: domain Description: AAA-ATPase_like Location: 2268-251 4 bp Feature: gene Location: 2747-2944 bp Feature: gene Location: 3215-4735 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 3689-4124 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 3689-41 24 bp Feature: gene Location: 5109-5291 bp Feature: gene Location: 5557-5754 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA-ATPase_like (pfam09820), RVT-UG4

Seq: DQWX01000084.1 TPA_asm: Beggiatoa sp. isolate HyVt-12 Ga0136651_10001877, whole genome shotgun sequence (11565 bp)
Overview 1 RT 1: 8135-11456 bp Neighborhood of RT #1 [8135, 11485] PBP2_HisK TMAO_torS RVT_N RVT-GII GIIM Feature: gene Location: 8135-9103 bp Feature: domain Description: PBP2_HisK Location: 8252-8912 bp Feature: domain Description: PBP2 _HisK Location: 82 52 -8912 bp Feature: gene Location: 9149-9565 bp Feature: domain Description: TMAO_torS Location: 9152-9551 bp Feature: domain Description: TMAO_torS Location: 9152 -9551 bp Feature: gene Location: 10160-11485 bp Feature: domain Description: RVT_N Location: 10226-10472 bp Feature: domain Description: RVT_N Location: 102 2 6-10472 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10514-11174 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10514-11174 bp Feature: domain Description: GIIM Note: maturase Location: 11246-11456 bp Feature: domain Description: GIIM Note: maturase Location: 112 46-11456 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PBP2_HisK (cd13704), TMAO_torS (TIGR02956), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: DQWX01000290.1 TPA_asm: Beggiatoa sp. isolate HyVt-12 Ga0136651_10001919, whole genome shotgun sequence (11404 bp)
Overview 1 RT 1: 1793-8948 bp Neighborhood of RT #1 [1793, 9283] SseC FlgO RVT_N RVT-GII YkfC HNHc CHAT AAA_16 Feature: gene Location: 1793-3037 bp Feature: domain Description: SseC Location: 2678-2879 bp Feature: domain Description: SseC Location: 2678-2879 bp Feature: gene Location: 3423-3980 bp Feature: domain Description: FlgO Location: 3528-3945 bp Feature: domain Description: FlgO Location: 3 528-3 945 bp Feature: gene Location: 4116-5849 bp Feature: domain Description: RVT_N Location: 4176-4422 bp Feature: domain Description: RVT_N Location: 4176-4422 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4464-5124 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4464-5124 bp Feature: domain Description: YkfC Location: 5277-5547 bp Feature: domain Description: YkfC Location: 5277-5547 bp Feature: domain Description: HNHc Note: nucleases Location: 5634-5784 bp Feature: domain Description: HNHc Note: nucleases Location: 563 4-5784 bp Feature: gene Location: 6440-7195 bp Feature: gene Location: 7397-9283 bp Feature: domain Description: CHAT Location: 7502-8417 bp Feature: domain Description: CHAT Location: 7502-8417 bp Feature: domain Description: AAA_16 Location: 8585-8948 bp Feature: domain Description: AAA_16 Location: 8585-8948 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SseC (pfam04888), FlgO (pfam17680), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507), CHAT (pfam12770), AAA_16 (pfam13191)

Seq: DQWX01000244.1 TPA_asm: Beggiatoa sp. isolate HyVt-12 Ga0136651_10014170, whole genome shotgun sequence (4380 bp)
Overview 1 RT 1: 1-4378 bp Neighborhood of RT #1 [1, 4378] DUF11 vWFA DUF29 RVT-UNC Feature: gene Location: 1-1110 bp Feature: domain Description: DUF11 Location: 4-193 bp Feature: domain Description: DUF11 Location: 4 -193 bp Feature: domain Description: vWFA Location: 688-1099 bp Feature: domain Description: vWFA Location: 688-1099 bp Feature: gene Location: 1790-2935 bp Feature: domain Description: DUF29 Location: 2612-2855 bp Feature: domain Description: DUF29 Location: 2612-2855 bp Feature: gene Location: 3040-4197 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 3055-3223 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 3055-3223 bp Feature: gene Location: 4199-4378 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF11 (pfam01345), vWFA (cl00057), DUF29 (pfam01724), RVT-UG10/RVT-CRISPR/RVT-UG12(RVT-UNC)