myRT

myRT report for GCA_011047125.1_ASM1104712v1

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Seq: DSNU01000281.1 TPA_asm: bacterium isolate SpSt-324 Ga0073934_10001359, whole genome shotgun sequence (59417 bp)
Overview 1 RT 1: 12310-14394 bp Neighborhood of RT #1 [12310, 14435] Avd_like RVT-DGRs DUF2204 DUF2204 Feature: gene Location: 12310-12477 bp Feature: domain Description: Avd_like Location: 12331-12463 bp Feature: domain Description: Avd_like Location: 1 2331 -1 2463 bp Feature: gene Location: 12592-12762 bp Feature: gene Location: 13074-13625 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 13077-13341 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 3077-1 3341 bp Feature: gene Location: 13622-13873 bp Feature: gene Location: 13857-14435 bp Feature: domain Description: DUF2204 Location: 13881-14025 bp Feature: domain Description: DUF2204 Location: 1 3881 -1 4025 bp Feature: domain Description: DUF2204 Location: 14172-14394 bp Feature: domain Description: DUF2204 Location: 1 41 72-1 4394 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), RVT-DGRs, DUF2204 (pfam09970)

Seq: DSNU01000230.1 TPA_asm: bacterium isolate SpSt-324 Ga0073934_10003077, whole genome shotgun sequence (31923 bp)
Overview 1 RT 1: 29810-31810 bp Neighborhood of RT #1 [29810, 31920] RVT-GII GIIM Feature: gene Location: 29810-29995 bp Feature: gene Location: 29904-30185 bp Feature: gene Location: 30715-31920 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30856-31525 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30856-3152 5 bp Feature: domain Description: GIIM Note: maturase Location: 31606-31810 bp Feature: domain Description: GIIM Note: maturase Location: 31606-31810 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: DSNU01000109.1 TPA_asm: bacterium isolate SpSt-324 Ga0073934_10003397, whole genome shotgun sequence (29452 bp)
Overview 1 RT 1: 21279-27962 bp Neighborhood of RT #1 [21279, 27988] Alginate_lyase Alginate_lyase FlgD_ig DUF3800 RVT-DGRs Avd_like Feature: gene Location: 21279-25013 bp Feature: domain Description: Alginate_lyase Location: 21918-22146 bp Feature: domain Description: Alginate_lyase Location: 21918-22146 bp Feature: domain Description: Alginate_lyase Location: 22272-22455 bp Feature: domain Description: Alginate_lyase Location: 22272-22455 bp Feature: domain Description: FlgD_ig Location: 24774-24945 bp Feature: domain Description: FlgD_ig Location: 24774-24945 bp Feature: gene Location: 25168-25827 bp Feature: domain Description: DUF3800 Location: 25180-25741 bp Feature: domain Description: DUF3 800 Location: 25180-25741 bp Feature: gene Location: 25843-26916 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 26053-26689 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 26053 -26689 bp Feature: gene Location: 26915-27214 bp Feature: gene Location: 27635-27988 bp Feature: domain Description: Avd_like Location: 27662-27962 bp Feature: domain Description: Avd_like Location: 27662-27962 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Alginate_lyase (pfam05426), FlgD_ig (pfam13860), DUF3800 (pfam12686), RVT-DGRs, Avd_like (cd16376)

Seq: DSNU01000095.1 TPA_asm: bacterium isolate SpSt-324 Ga0073934_10004683, whole genome shotgun sequence (22260 bp)
Overview 1 RT 1: 13431-17884 bp Neighborhood of RT #1 [13431, 17946] RVT_N RVT-GII GIIM VCBS VCBS VCBS VCBS VCBS UnbV_ASPIC Feature: gene Location: 13431-13976 bp Feature: gene Location: 13976-14227 bp Feature: gene Location: 14218-15585 bp Feature: domain Description: RVT_N Location: 14386-14554 bp Feature: domain Description: RVT_N Location: 14 386-14 554 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14599-15223 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14 599-15223 bp Feature: domain Description: GIIM Note: maturase Location: 15274-15502 bp Feature: domain Description: GIIM Note: maturase Location: 15274 -15502 bp Feature: gene Location: 15637-15792 bp Feature: gene Location: 16024-17946 bp Feature: domain Description: VCBS Location: 16381-16456 bp Feature: domain Description: VCBS Location: 16381-164 56 bp Feature: domain Description: VCBS Location: 16627-16813 bp Feature: domain Description: VCBS Location: 16627-16813 bp Feature: domain Description: VCBS Location: 16915-17050 bp Feature: domain Description: VCBS Location: 16915-17050 bp Feature: domain Description: VCBS Location: 17209-17383 bp Feature: domain Description: VCBS Location: 17209-17383 bp Feature: domain Description: VCBS Location: 17440-17584 bp Feature: domain Description: VCBS Location: 174 4 0-17584 bp Feature: domain Description: UnbV_ASPIC Location: 17686-17884 bp Feature: domain Description: UnbV_ASPIC Location: 17686-17884 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), VCBS (pfam13517), UnbV_ASPIC (pfam07593)

Seq: DSNU01000119.1 TPA_asm: bacterium isolate SpSt-324 Ga0073934_10040976, whole genome shotgun sequence (4196 bp)
Overview 1 RT 1: 219-3843 bp Neighborhood of RT #1 [219, 3843] KOG1391 BrnA_antitoxin RVT-DGRs Avd_like Feature: gene Location: 219-1394 bp Feature: domain Description: KOG1391 Location: 237-1392 bp Feature: domain Description: KOG1391 Location: 237-1392 bp Feature: gene Location: 1569-1904 bp Feature: domain Description: BrnA_antitoxin Location: 1656-1833 bp Feature: domain Description: BrnA_antitoxin Location: 165 6-1833 bp Feature: gene Location: 1963-3030 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2170-2812 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2170-2812 bp Feature: gene Location: 3168-3530 bp Feature: domain Description: Avd_like Location: 3192-3495 bp Feature: domain Description: Avd_like Location: 3192-3495 bp Feature: gene Location: 3595-3843 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KOG1391 (KOG1391, Acetyl-CoA acetyltransferase ), BrnA_antitoxin (pfam14384), RVT-DGRs, Avd_like (cd16376)

Seq: DSNU01000187.1 TPA_asm: bacterium isolate SpSt-324 Ga0073934_10049080, whole genome shotgun sequence (3689 bp)
Overview 1 RT 1: 6-2963 bp Neighborhood of RT #1 [6, 2963] RVT-CRISPR-like Feature: gene Location: 6-899 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 243-852 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 243-852 bp Feature: gene Location: 974-2188 bp Feature: gene Location: 2172-2963 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR