myRT

myRT report for GCA_011050445.1_ASM1105044v1

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Seq: DRFR01000051.1 TPA_asm: Pseudoalteromonas sp. isolate HyVt-327 HyVt-327_k145_159701, whole genome shotgun sequence (7279 bp)
Overview 1 RT 1: 2269-7031 bp Neighborhood of RT #1 [2269, 7060] YuxK PRK15441 RVT-UG15 DsbA_FrnE PepP Feature: gene Location: 2269-2691 bp Feature: domain Description: YuxK Location: 2296-2680 bp Feature: domain Description: YuxK Location: 2296-2680 bp Feature: gene Location: 2793-3071 bp Feature: domain Description: PRK15441 Location: 2796-3066 bp Feature: domain Description: PRK1 5441 Location: 2796-3066 bp Feature: gene Location: 3243-4835 bp Feature: RT Description: RVT-UG15 Note: UG15 RT Location: 3654-4056 bp Feature: RT Description: RVT-UG1 5 Note: UG1 5 RT Location: 3654-4056 bp Feature: gene Location: 5057-5716 bp Feature: domain Description: DsbA_FrnE Location: 5075-5678 bp Feature: domain Description: DsbA_FrnE Location: 5075-5678 bp Feature: gene Location: 5840-7060 bp Feature: domain Description: PepP Location: 5930-7031 bp Feature: domain Description: PepP Location: 5930-7031 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YuxK (COG3011), PRK15441 (peptidyl-prolyl cis-trans isomerase C; Provisional), RVT-UG15, DsbA_FrnE (cd03024), PepP (COG0006)

Seq: DRFR01000075.1 TPA_asm: Pseudoalteromonas sp. isolate HyVt-327 HyVt-327_k145_193566, whole genome shotgun sequence (13601 bp)
Overview 1 RT 1: 6892-11536 bp Neighborhood of RT #1 [6892, 11547] MarR organ_hyd_perox RVT-GII GIIM PRK10141 PRK08955 Feature: gene Location: 6892-7368 bp Feature: domain Description: MarR Location: 6991-7285 bp Feature: domain Description: MarR Location: 6991-72 85 bp Feature: gene Location: 7456-7884 bp Feature: domain Description: organ_hyd_perox Location: 7483-7879 bp Feature: domain Description: organ_hyd_perox Location: 7483-7879 bp Feature: gene Location: 8676-9950 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8889-9510 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8889-9510 bp Feature: domain Description: GIIM Note: maturase Location: 9555-9774 bp Feature: domain Description: GIIM Note: maturase Location: 9555-9774 bp Feature: gene Location: 10148-10504 bp Feature: domain Description: PRK10141 Location: 10151-10424 bp Feature: domain Description: PRK10141 Location: 10151-1042 4 bp Feature: gene Location: 10537-11547 bp Feature: domain Description: PRK08955 Location: 10540-11536 bp Feature: domain Description: PRK08955 Location: 10540-11536 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MarR (pfam01047), organ_hyd_perox (TIGR03561), RVT-GII, GIIM (pfam08388), PRK10141 (DNA-binding transcriptional repressor ArsR; Provisional), PRK08955 (glyceraldehyde-3-phosphate dehydrogenase; Validated)

Seq: DRFR01000162.1 TPA_asm: Pseudoalteromonas sp. isolate HyVt-327 HyVt-327_k145_83394, whole genome shotgun sequence (10739 bp)
Overview 1 RT 1: 874-3949 bp Neighborhood of RT #1 [874, 3949] PRK12513 RVT-UG17 Feature: gene Location: 874-1452 bp Feature: domain Description: PRK12513 Location: 922-1441 bp Feature: domain Description: PRK12513 Location: 922-1441 bp Feature: gene Location: 1439-2062 bp Feature: gene Location: 2159-3478 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 2384-2966 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 23 84-2966 bp Feature: gene Location: 3525-3776 bp Feature: gene Location: 3797-3949 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK12513 (RNA polymerase sigma factor; Provisional), RVT-UG17

Seq: DRFR01000174.1 TPA_asm: Pseudoalteromonas sp. isolate HyVt-327 HyVt-327_k145_98385, whole genome shotgun sequence (33889 bp)
Overview 1 RT 1: 30210-33516 bp Neighborhood of RT #1 [30210, 33516] RVT-Retrons Feature: gene Location: 30210-30809 bp Feature: gene Location: 30931-31356 bp Feature: gene Location: 31622-32554 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 31721-32312 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 31721-32312 bp Feature: gene Location: 32551-33516 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons