myRT

myRT report for GCA_011057215.1_ASM1105721v1

Download annotations/find similar RTs

Seq: MKPT01000105.1 Burkholderia cenocepacia strain 32170 BCC32170_reads_contig_193, whole genome shotgun sequence (4244 bp)
Overview 1 RT 1: 1-4178 bp Neighborhood of RT #1 [1, 4178] RVT_N RVT-GII GIIM HNHc DEXHc_Snf Feature: gene Location: 1-462 bp Feature: gene Location: 629-2347 bp Feature: RT Description: RVT_N Location: 686-923 bp Feature: RT Description: RVT_N Location: 686-923 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 974-1625 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 974-1 625 bp Feature: domain Description: GIIM Note: maturase Location: 1679-1910 bp Feature: domain Description: GIIM Note: maturase Location: 1 679-1 91 0 bp Feature: domain Description: HNHc Note: nucleases Location: 2144-2300 bp Feature: domain Description: HNHc Note: nucleases Location: 21 44-2300 bp Feature: gene Location: 2944-3999 bp Feature: domain Description: DEXHc_Snf Location: 3163-3421 bp Feature: domain Description: DEXHc_Snf Location: 31 63-3421 bp Feature: gene Location: 4026-4178 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DEXHc_Snf (cd17919), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: MKPT01000143.1 Burkholderia cenocepacia strain 32170 BCC32170_reads_contig_37, whole genome shotgun sequence (71178 bp)
Overview 1 RT 1: 24360-29709 bp Neighborhood of RT #1 [24360, 29714] MFS_MucK Histone_HNS RVT-Retrons FIN his_ut_repres Feature: gene Location: 24360-25595 bp Feature: domain Description: MFS_MucK Location: 24438-25572 bp Feature: domain Description: MFS_MucK Location: 2 4438-2 5572 bp Feature: gene Location: 25894-26223 bp Feature: domain Description: Histone_HNS Location: 25915-26152 bp Feature: domain Description: Histone_HNS Location: 2 5915-2 6152 bp Feature: gene Location: 26549-28009 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 27125-27761 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 712 5-2 7761 bp Feature: gene Location: 28152-28724 bp Feature: domain Description: FIN Location: 28338-28689 bp Feature: domain Description: FIN Location: 2 8338-2 8689 bp Feature: gene Location: 28959-29714 bp Feature: domain Description: his_ut_repres Location: 29037-29709 bp Feature: domain Description: his_ut_repres Location: 2 9037-2 9709 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MFS_MucK (cd17371), Histone_HNS (pfam00816), RVT-Retrons, FIN (cd16389), his_ut_repres (TIGR02018)

Seq: MKPT01000190.1 Burkholderia cenocepacia strain 32170 BCC32170_reads_contig_8, whole genome shotgun sequence (166285 bp)
Overview 1 RT 1: 40438-47216 bp Neighborhood of RT #1 [40438, 47218] PRK09054 RpiR RVT-GII GIIM COG3547 COG1981 Feature: gene Location: 40438-42294 bp Feature: domain Description: PRK09054 Location: 40450-42253 bp Feature: domain Description: PRK09054 Location: 40450-42253 bp Feature: gene Location: 42589-43437 bp Feature: domain Description: RpiR Location: 42592-43414 bp Feature: domain Description: RpiR Location: 42592-43 414 bp Feature: gene Location: 43547-44836 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43802-44417 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43 802-44417 bp Feature: domain Description: GIIM Note: maturase Location: 44477-44678 bp Feature: domain Description: GIIM Note: maturase Location: 44477-44678 bp Feature: gene Location: 45342-46364 bp Feature: domain Description: COG3547 Location: 45357-46320 bp Feature: domain Description: COG3 547 Location: 453 57-463 20 bp Feature: gene Location: 46796-47218 bp Feature: domain Description: COG1981 Location: 46802-47216 bp Feature: domain Description: COG1981 Location: 46802-47216 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09054 (phosphogluconate dehydratase; Validated), RpiR (COG1737), RVT-GII, GIIM (pfam08388), COG3547 (Transposase ), COG1981 (Uncharacterized membrane protein )

Seq: MKPT01000207.1 Burkholderia cenocepacia strain 32170 BCC32170_reads_contig_95, whole genome shotgun sequence (82044 bp)
Overview 1 RT 1: 29044-31887 bp Neighborhood of RT #1 [29044, 31887] Avd_like RVT-DGRs Feature: gene Location: 29044-29508 bp Feature: gene Location: 29523-29912 bp Feature: domain Description: Avd_like Location: 29550-29856 bp Feature: domain Description: Avd_like Location: 29550-29856 bp Feature: gene Location: 29893-31239 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 30337-31024 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 30337-31024 bp Feature: gene Location: 31250-31603 bp Feature: gene Location: 31600-31887 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), RVT-DGRs