myRT

myRT report for GCA_011064595.1_ASM1106459v1

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Seq: JAALJI010000003.1 Paludisphaera sp. JC670 3, whole genome shotgun sequence (394590 bp)
Overview 1 RT 1: 122741-128979 bp Neighborhood of RT #1 [122741, 129125] PRK14470 SPFH_eoslipins_u2 RVT-Retrons YdfJ YdfJ Feature: gene Location: 122741-123778 bp Feature: domain Description: PRK14470 Location: 122777-123767 bp Feature: domain Description: PRK1 4470 Location: 1 22777-1 23767 bp Feature: gene Location: 124184-124912 bp Feature: domain Description: SPFH_eoslipins_u2 Location: 124208-124835 bp Feature: domain Description: SPFH_eoslipins_u2 Location: 1 24208-1 24835 bp Feature: gene Location: 124909-125850 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 125086-125623 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 25086-1 25623 bp Feature: gene Location: 125910-126314 bp Feature: gene Location: 126624-129125 bp Feature: domain Description: YdfJ Location: 126639-128127 bp Feature: domain Description: YdfJ Location: 1 26639-1 281 27 bp Feature: domain Description: YdfJ Location: 128274-128979 bp Feature: domain Description: YdfJ Location: 1 28274-1 28979 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK14470 (ribosomal RNA large subunit methyltransferase N; Provisional), SPFH_eoslipins_u2 (cd13438), RVT-Retrons, YdfJ (COG2409)

Seq: JAALJI010000062.1 Paludisphaera sp. JC670 62, whole genome shotgun sequence (9579 bp)
Overview 1 RT 1: 2228-7809 bp Neighborhood of RT #1 [2228, 7844] DUF3102 RVT-CRISPR-like HTH_17 Feature: gene Location: 2228-3601 bp Feature: domain Description: DUF3102 Location: 2651-2792 bp Feature: domain Description: DUF3102 Location: 2 651-2 792 bp Feature: gene Location: 3711-4358 bp Feature: gene Location: 4545-5597 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 4551-5052 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 4551-5052 bp Feature: gene Location: 5960-7633 bp Feature: gene Location: 7623-7844 bp Feature: domain Description: HTH_17 Location: 7641-7809 bp Feature: domain Description: HTH_17 Location: 7641-7809 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3102 (pfam11300), RVT-CRISPR, HTH_17 (pfam12728)

Seq: JAALJI010000068.1 Paludisphaera sp. JC670 68, whole genome shotgun sequence (8513 bp)
Overview 1 RT 1: 1575-8510 bp Neighborhood of RT #1 [1575, 8510] RVT-Retrons Feature: gene Location: 1575-3524 bp Feature: gene Location: 3702-5504 bp Feature: gene Location: 5852-7486 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 6638-7253 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 663 8-7253 bp Feature: gene Location: 7920-8510 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons

Seq: JAALJI010000007.1 Paludisphaera sp. JC670 7, whole genome shotgun sequence (320712 bp)
Overview 1 RT 1: 12703-25175 bp Neighborhood of RT #1 [12703, 25177] KOG0318 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 WGR_MMR_like RVT-Retrons MIOX Feature: gene Location: 12703-19497 bp Feature: domain Description: KOG0318 Location: 13333-13888 bp Feature: domain Description: KOG0318 Location: 13333-13888 bp Feature: domain Description: HEAT_2 Location: 14005-14236 bp Feature: domain Description: HEAT_2 Location: 14 005-14 236 bp Feature: domain Description: HEAT_2 Location: 14266-14521 bp Feature: domain Description: HEAT_2 Location: 14 266-14 521 bp Feature: domain Description: HEAT_2 Location: 14890-15142 bp Feature: domain Description: HEAT_2 Location: 14 890-1514 2 bp Feature: domain Description: HEAT_2 Location: 15400-15535 bp Feature: domain Description: HEAT_2 Location: 154 00-15535 bp Feature: domain Description: HEAT_2 Location: 15577-15727 bp Feature: domain Description: HEAT_2 Location: 15577-15727 bp Feature: domain Description: HEAT_2 Location: 15733-15868 bp Feature: domain Description: HEAT_2 Location: 15733-15868 bp Feature: domain Description: HEAT_2 Location: 15913-16117 bp Feature: domain Description: HEAT_2 Location: 15913-16117 bp Feature: domain Description: HEAT_2 Location: 16240-16456 bp Feature: domain Description: HEAT_2 Location: 1624 0-164 56 bp Feature: domain Description: HEAT_2 Location: 16798-16966 bp Feature: domain Description: HEAT_2 Location: 16798-16966 bp Feature: domain Description: HEAT_2 Location: 17170-17356 bp Feature: domain Description: HEAT_2 Location: 17170-17356 bp Feature: domain Description: HEAT_2 Location: 17785-17995 bp Feature: domain Description: HEAT_2 Location: 17785-17995 bp Feature: domain Description: HEAT_2 Location: 18022-18202 bp Feature: domain Description: HEAT_2 Location: 18022-18202 bp Feature: domain Description: HEAT_2 Location: 18955-19153 bp Feature: domain Description: HEAT_2 Location: 18955-19153 bp Feature: gene Location: 19494-21371 bp Feature: domain Description: WGR_MMR_like Location: 21189-21354 bp Feature: domain Description: WGR_MMR_like Location: 21189-21354 bp Feature: gene Location: 21381-22730 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 21837-22458 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 21837-224 58 bp Feature: gene Location: 23191-23412 bp Feature: gene Location: 24293-25177 bp Feature: domain Description: MIOX Location: 24452-25175 bp Feature: domain Description: MIOX Location: 24 4 52-25175 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KOG0318 (KOG0318, WD40 repeat stress protein/actin interacting protein ), HEAT_2 (pfam13646), WGR_MMR_like (cd07996), RVT-Retrons, MIOX (pfam05153)