myRT

myRT report for GCA_011064615.1_ASM1106461v1

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Seq: JAALJH010000014.1 Aquisphaera sp. JC669 14, whole genome shotgun sequence (139097 bp)
Overview 1 RT 1: 22035-28436 bp Neighborhood of RT #1 [22035, 28462] DUF1501 Glyco_tran_WbsX RVT-Retrons DUF3467 PAS_4 PAS_4 Feature: gene Location: 22035-23507 bp Feature: domain Description: DUF1501 Location: 22263-23502 bp Feature: domain Description: DUF1 501 Location: 22263-23502 bp Feature: gene Location: 23562-24779 bp Feature: domain Description: Glyco_tran_WbsX Location: 23661-24765 bp Feature: domain Description: Glyco_tran_WbsX Location: 23661 -24765 bp Feature: gene Location: 24795-26135 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 25272-25908 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 25272-25908 bp Feature: gene Location: 26653-26991 bp Feature: domain Description: DUF3467 Location: 26725-26956 bp Feature: domain Description: DUF3467 Location: 26725-26956 bp Feature: gene Location: 27833-28462 bp Feature: domain Description: PAS_4 Location: 27926-28250 bp Feature: domain Description: PAS_4 Location: 27926-28250 bp Feature: domain Description: PAS_4 Location: 28304-28436 bp Feature: domain Description: PAS_4 Location: 28304-28436 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1501 (pfam07394), Glyco_tran_WbsX (pfam14307), RVT-Retrons, DUF3467 (pfam11950), PAS_4 (pfam08448)

Seq: JAALJH010000020.1 Aquisphaera sp. JC669 20, whole genome shotgun sequence (115534 bp)
Overview 1 RT 1: 36498-42830 bp Neighborhood of RT #1 [36498, 42847] PRK12330 FadM RVT-GII GIIM glpX Pur_DNA_glyco Feature: gene Location: 36498-38015 bp Feature: domain Description: PRK12330 Location: 36501-38013 bp Feature: domain Description: PRK12 330 Location: 36501-38013 bp Feature: gene Location: 38403-38810 bp Feature: domain Description: FadM Location: 38412-38796 bp Feature: domain Description: FadM Location: 38412 -38796 bp Feature: gene Location: 39420-40943 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39939-40599 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39939-40599 bp Feature: domain Description: GIIM Note: maturase Location: 40674-40884 bp Feature: domain Description: GIIM Note: maturase Location: 40674-40884 bp Feature: gene Location: 41111-42181 bp Feature: domain Description: glpX Location: 41147-42083 bp Feature: domain Description: glpX Location: 41147-42 083 bp Feature: gene Location: 42287-42847 bp Feature: domain Description: Pur_DNA_glyco Location: 42308-42830 bp Feature: domain Description: Pur_DNA_glyco Location: 42 308-42 830 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK12330 (methylmalonyl-CoA carboxytransferase subunit 5S), FadM (COG0824), RVT-GII, GIIM (pfam08388), glpX (TIGR00330), Pur_DNA_glyco (pfam02245)

Seq: JAALJH010000026.1 Aquisphaera sp. JC669 26, whole genome shotgun sequence (99593 bp)
Overview 1 RT 1: 259-3902 bp Neighborhood of RT #1 [259, 3934] RVT-GII GIIM PLPDE_III_ODC Feature: gene Location: 259-1530 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 463-1162 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 463 -1162 bp Feature: domain Description: GIIM Note: maturase Location: 1243-1429 bp Feature: domain Description: GIIM Note: maturase Location: 1243 -1429 bp Feature: gene Location: 2341-2478 bp Feature: gene Location: 2762-3934 bp Feature: domain Description: PLPDE_III_ODC Location: 2837-3902 bp Feature: domain Description: PLPDE_III_ODC Location: 283 7-3 902 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PLPDE_III_ODC (cd00622)

Seq: JAALJH010000005.1 Aquisphaera sp. JC669 5, whole genome shotgun sequence (247691 bp)
Overview 1 RT 1: 195006-205305 bp Neighborhood of RT #1 [195006, 205331] RVT-Retrons STKc_PknB_like WD40 WD40 WD40 WD40 Sig-70_plancto1 Feature: gene Location: 195006-196817 bp Feature: gene Location: 196986-198806 bp Feature: gene Location: 198814-200445 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 199597-200218 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 199597-200218 bp Feature: gene Location: 200476-203961 bp Feature: domain Description: STKc_PknB_like Location: 200716-201565 bp Feature: domain Description: STKc_PknB_like Location: 200716-201565 bp Feature: domain Description: WD40 Location: 202645-203143 bp Feature: domain Description: WD4 0 Location: 20264 5-20314 3 bp Feature: domain Description: WD40 Location: 203185-203305 bp Feature: domain Description: WD4 0 Location: 203185-203305 bp Feature: domain Description: WD40 Location: 203314-203407 bp Feature: domain Description: WD4 0 Location: 203314 -2034 07 bp Feature: domain Description: WD40 Location: 203422-203953 bp Feature: domain Description: WD4 0 Location: 2034 22-203953 bp Feature: gene Location: 204699-205331 bp Feature: domain Description: Sig-70_plancto1 Location: 204756-205305 bp Feature: domain Description: Sig-70_plancto1 Location: 204 756-205305 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, STKc_PknB_like (cd14014), WD40 (smart00320), Sig-70_plancto1 (TIGR02984)