myRT

myRT report for GCA_011065955.1_ASM1106595v1

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Seq: JAAMNI010000013.1 Clostridium sp. FP2 scaffold_12, whole genome shotgun sequence (182969 bp)
Overview 1 RT 1: 170917-179706 bp Neighborhood of RT #1 [170917, 179706] HEAT HEAT Resolvase RVT-GII AbiH Feature: gene Location: 170917-173100 bp Feature: domain Description: HEAT Location: 171931-172120 bp Feature: domain Description: HEAT Location: 1 71 931 -1 721 20 bp Feature: domain Description: HEAT Location: 172741-173074 bp Feature: domain Description: HEAT Location: 1 72741 -1 73074 bp Feature: gene Location: 173439-174140 bp Feature: domain Description: Resolvase Location: 173517-173979 bp Feature: domain Description: Resolvase Location: 1 7351 7-1 73979 bp Feature: gene Location: 175046-176941 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 175370-176075 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 75370-1 76075 bp Feature: gene Location: 177097-178050 bp Feature: domain Description: AbiH Location: 177109-177934 bp Feature: domain Description: AbiH Location: 1 771 09-1 77934 bp Feature: gene Location: 178435-179706 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HEAT (sd00044), Resolvase (smart00857), RVT-GII, AbiH (pfam14253)

Seq: JAAMNI010000015.1 Clostridium sp. FP2 scaffold_14, whole genome shotgun sequence (162785 bp)
Overview 1 RT 1: 22890-30623 bp Neighborhood of RT #1 [22890, 30623] COG5628 COG3981 RVT-GII KOG4768 RVT_N RVT-GII GIIM HNHc RVT_N RVT-GII Feature: gene Location: 22890-23390 bp Feature: domain Description: COG5628 Location: 22953-23328 bp Feature: domain Description: COG562 8 Location: 2 2 953-2 332 8 bp Feature: gene Location: 23510-24019 bp Feature: domain Description: COG3981 Location: 23513-24014 bp Feature: domain Description: COG3981 Location: 2 3513-2 4014 bp Feature: gene Location: 24285-25454 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24288-24690 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 42 88-2 4690 bp Feature: domain Description: KOG4768 Location: 24765-25236 bp Feature: domain Description: KOG4768 Location: 2 4765-2 52 36 bp Feature: gene Location: 25580-27355 bp Feature: RT Description: RVT_N Location: 25631-25871 bp Feature: RT Description: RVT_N Location: 2 5631-2 5871 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25931-26591 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 5931-2 6591 bp Feature: domain Description: GIIM Note: maturase Location: 26654-26888 bp Feature: domain Description: GIIM Note: maturase Location: 2 6654-2 6888 bp Feature: domain Description: HNHc Note: nucleases Location: 27092-27245 bp Feature: domain Description: HNHc Note: nucleases Location: 2 7092 -2 72 45 bp Feature: gene Location: 27906-28538 bp Feature: RT Description: RVT_N Location: 27960-28206 bp Feature: RT Description: RVT_N Location: 2 7960-2 82 06 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28260-28497 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 82 60-2 8497 bp Feature: gene Location: 29214-30059 bp Feature: gene Location: 30444-30623 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG5628 (Predicted acetyltransferase ), COG3981 (Predicted acetyltransferase ), RVT-GII, KOG4768 (KOG4768, Mitochondrial mRNA maturase ), RVT_N (pfam13655), GIIM (pfam08388), HNHc (smart00507)

Seq: JAAMNI010000016.1 Clostridium sp. FP2 scaffold_15, whole genome shotgun sequence (323151 bp)
Overview 1 RT 1: 142708-149773 bp Neighborhood of RT #1 [142708, 150036] Collagen KOG3544 Collagen RVT-GII GIIM Beta4Glucosyltransferase TPR TPR GT_2_like_c Beta4Glucosyltransferase Feature: gene Location: 142708-144279 bp Feature: domain Description: Collagen Location: 143206-143377 bp Feature: domain Description: Collagen Location: 143 206-143 3 77 bp Feature: domain Description: KOG3544 Location: 143473-143875 bp Feature: domain Description: KOG3 544 Location: 143 473 -143 875 bp Feature: domain Description: Collagen Location: 143995-144127 bp Feature: domain Description: Collagen Location: 143 995-144127 bp Feature: gene Location: 144769-145212 bp Feature: gene Location: 145673-147094 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 146024-146651 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 146024-146651 bp Feature: domain Description: GIIM Note: maturase Location: 146708-146936 bp Feature: domain Description: GIIM Note: maturase Location: 146708-14693 6 bp Feature: gene Location: 147282-148343 bp Feature: domain Description: Beta4Glucosyltransferase Location: 147285-147798 bp Feature: domain Description: Beta4Glucosyltransferase Location: 147285-147798 bp Feature: domain Description: TPR Location: 147843-148125 bp Feature: domain Description: TPR Location: 147843 -148125 bp Feature: domain Description: TPR Location: 148194-148302 bp Feature: domain Description: TPR Location: 148194-1483 02 bp Feature: gene Location: 148432-150036 bp Feature: domain Description: GT_2_like_c Location: 148486-149203 bp Feature: domain Description: GT_2_like_c Location: 148486-149203 bp Feature: domain Description: Beta4Glucosyltransferase Location: 149353-149773 bp Feature: domain Description: Beta4Glucosyltransferase Location: 1493 53 -149773 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Collagen (pfam01391), KOG3544 (KOG3544, Collagens (type IV and type XIII), and related proteins ), RVT-GII, GIIM (pfam08388), Beta4Glucosyltransferase (cd02511), TPR (smart00028), GT_2_like_c (cd04186)

Seq: JAAMNI010000061.1 Clostridium sp. FP2 scaffold_61, whole genome shotgun sequence (2128 bp)
Overview 1 RT 1: 554-1835 bp Neighborhood of RT #1 [554, 2125] RVT_N RVT-GII GIIM Feature: gene Location: 554-2125 bp Feature: RT Description: RVT_N Location: 617-857 bp Feature: RT Description: RVT_N Location: 617-857 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 905-1550 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 905-1550 bp Feature: domain Description: GIIM Note: maturase Location: 1601-1835 bp Feature: domain Description: GIIM Note: maturase Location: 1601-1835 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)