myRT

myRT report for GCA_011077045.1_ASM1107704v1

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Seq: JAALAH010000013.1 Escherichia coli strain M-10194-X3 NODE_13_length_130185_cov_48.3511, whole genome shotgun sequence (130185 bp)
Overview 1 RT 1: 76813-80253 bp Neighborhood of RT #1 [76813, 80253] DUF1380 RVT_N RVT-GII GIIM HNHc Feature: gene Location: 76813-77235 bp Feature: domain Description: DUF1380 Location: 76816-77110 bp Feature: domain Description: DUF1 380 Location: 7681 6-771 1 0 bp Feature: gene Location: 77232-77423 bp Feature: gene Location: 77737-79404 bp Feature: domain Description: RVT_N Location: 77785-78022 bp Feature: domain Description: RVT_N Location: 77785-78022 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 78073-78715 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 78073-7871 5 bp Feature: domain Description: GIIM Note: maturase Location: 78766-79000 bp Feature: domain Description: GIIM Note: maturase Location: 78766-79000 bp Feature: domain Description: HNHc Note: nucleases Location: 79210-79369 bp Feature: domain Description: HNHc Note: nucleases Location: 7921 0-79369 bp Feature: gene Location: 79684-79866 bp Feature: gene Location: 79978-80253 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1380 (pfam07128), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: JAALAH010000015.1 Escherichia coli strain M-10194-X3 NODE_15_length_124475_cov_92.1666, whole genome shotgun sequence (124475 bp)
Overview 1 RT 1: 670-5483 bp Neighborhood of RT #1 [670, 6199] RVT-UG1 GerD HEPN_Apea Feature: gene Location: 670-4359 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 1282-1792 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 12 82 -1792 bp Feature: gene Location: 4368-4802 bp Feature: domain Description: GerD Location: 4446-4560 bp Feature: domain Description: GerD Location: 4446-4560 bp Feature: gene Location: 5099-6199 bp Feature: domain Description: HEPN_Apea Location: 5168-5483 bp Feature: domain Description: HEPN_Apea Location: 5168-5483 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG1, GerD (pfam17898), HEPN_Apea (pfam18739)

Seq: JAALAH010000051.1 Escherichia coli strain M-10194-X3 NODE_51_length_18678_cov_104.446, whole genome shotgun sequence (18678 bp)
Overview 1 RT 1: 12327-16309 bp Neighborhood of RT #1 [12327, 16335] Asparaginase_2 RVT-GII DcuC Feature: gene Location: 12327-13358 bp Feature: domain Description: Asparaginase_2 Location: 12417-13350 bp Feature: domain Description: Asparaginase_2 Location: 12417-13 3 50 bp Feature: gene Location: 13685-13834 bp Feature: gene Location: 13882-14328 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14188-14290 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14188-14290 bp Feature: gene Location: 14550-14921 bp Feature: gene Location: 14974-16335 bp Feature: domain Description: DcuC Location: 14977-16309 bp Feature: domain Description: DcuC Location: 14977-163 09 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Asparaginase_2 (pfam01112), RVT-GII, DcuC (TIGR00771)

Seq: JAALAH010000055.1 Escherichia coli strain M-10194-X3 NODE_55_length_15975_cov_60.3882, whole genome shotgun sequence (15975 bp)
Overview 1 RT 1: 12190-15361 bp Neighborhood of RT #1 [12190, 15363] PRK10276 RVT-GII InsA DDE_Tnp_IS1 Feature: gene Location: 12190-12873 bp Feature: domain Description: PRK10276 Location: 12493-12856 bp Feature: domain Description: PRK10276 Location: 124 93-12856 bp Feature: gene Location: 12927-13529 bp Feature: gene Location: 13504-14514 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13510-14122 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13510-14 122 bp Feature: gene Location: 14666-14941 bp Feature: domain Description: InsA Location: 14669-14933 bp Feature: domain Description: InsA Location: 14 669-14 933 bp Feature: gene Location: 14860-15363 bp Feature: domain Description: DDE_Tnp_IS1 Location: 14971-15361 bp Feature: domain Description: DDE_Tnp_IS1 Location: 14 971-15361 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, InsA (COG3677), DDE_Tnp_IS1 (pfam03400)

Seq: JAALAH010000059.1 Escherichia coli strain M-10194-X3 NODE_59_length_13278_cov_90.1749, whole genome shotgun sequence (13278 bp)
Overview 1 RT 1: 130-3153 bp Neighborhood of RT #1 [130, 3218] PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 130-483 bp Feature: domain Description: PHA02517 Location: 133-478 bp Feature: domain Description: PHA025 17 Location: 133-478 bp Feature: gene Location: 678-2201 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 951-1683 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 95 1-1683 bp Feature: domain Description: GIIM Note: maturase Location: 1758-1956 bp Feature: domain Description: GIIM Note: maturase Location: 175 8-195 6 bp Feature: gene Location: 2155-2580 bp Feature: gene Location: 2793-3218 bp Feature: domain Description: PHA02517 Location: 2817-3153 bp Feature: domain Description: PHA025 17 Location: 2817-315 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)