myRT

myRT report for GCA_011077065.1_ASM1107706v1

Download annotations/find similar RTs

Seq: JAALAI010000033.1 Escherichia coli strain M-0970-X3 NODE_33_length_49881_cov_95.9496, whole genome shotgun sequence (49881 bp)
Overview 1 RT 1: 25979-30262 bp Neighborhood of RT #1 [25979, 30270] RVT-GII RVT-GII GIIM YesM Feature: gene Location: 25979-26884 bp Feature: gene Location: 27142-27339 bp Feature: gene Location: 27370-27909 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27700-27778 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27700-27778 bp Feature: gene Location: 27937-28458 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27943-28225 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27943-28225 bp Feature: domain Description: GIIM Note: maturase Location: 28273-28453 bp Feature: domain Description: GIIM Note: maturase Location: 28273-28453 bp Feature: gene Location: 28780-28968 bp Feature: gene Location: 29008-30270 bp Feature: domain Description: YesM Location: 29521-30262 bp Feature: domain Description: YesM Location: 29521 -30262 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), YesM (COG2972)

Seq: JAALAI010000087.1 Escherichia coli strain M-0970-X3 NODE_87_length_2272_cov_216.071, whole genome shotgun sequence (2272 bp)
Overview 1 RT 1: 1-1935 bp Neighborhood of RT #1 [1, 2180] RVT-GII GIIM Feature: gene Location: 1-363 bp Feature: gene Location: 657-2180 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1662 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1662 bp Feature: domain Description: GIIM Note: maturase Location: 1737-1935 bp Feature: domain Description: GIIM Note: maturase Location: 1737-1935 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JAALAI010000008.1 Escherichia coli strain M-0970-X3 NODE_8_length_162937_cov_92.7914, whole genome shotgun sequence (162937 bp)
Overview 1 RT 1: 28838-35081 bp Neighborhood of RT #1 [28838, 35218] Phage_integrase RVT-UG5 nitrilase AbiEi_3_N AbiEi_3 AbiEii Feature: gene Location: 28838-29104 bp Feature: domain Description: Phage_integrase Location: 28904-29000 bp Feature: domain Description: Phage_integrase Location: 28904-29000 bp Feature: gene Location: 29187-29657 bp Feature: gene Location: 30004-33213 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 30532-31021 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 3 053 2-3 1021 bp Feature: domain Description: nitrilase Location: 32527-33124 bp Feature: domain Description: nitrilase Location: 3 2527-3 3 124 bp Feature: gene Location: 33508-34311 bp Feature: domain Description: AbiEi_3_N Location: 33541-33802 bp Feature: domain Description: AbiEi_3 _N Location: 3 3 541-3 3 802 bp Feature: domain Description: AbiEi_3 Location: 33814-34270 bp Feature: domain Description: AbiEi_3 Location: 3 3 814-3 4270 bp Feature: gene Location: 34298-35218 bp Feature: domain Description: AbiEii Location: 34340-35081 bp Feature: domain Description: AbiEii Location: 3 43 40-3 5081 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_integrase (pfam00589), RVT-UG5, nitrilase (cl11424), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), AbiEii (pfam08843)