myRT

myRT report for GCA_011077095.1_ASM1107709v1

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Seq: JAALAE010000012.1 Escherichia coli strain M-S87-X3 NODE_12_length_141443_cov_104.856, whole genome shotgun sequence (141443 bp)
Overview 1 RT 1: 84936-88818 bp Neighborhood of RT #1 [84936, 88823] rph pyrE RVT-Retrons slmA dut Feature: gene Location: 84936-85652 bp Feature: domain Description: rph Location: 84939-85647 bp Feature: domain Description: rph Location: 84939-85647 bp Feature: gene Location: 85703-86359 bp Feature: domain Description: pyrE Location: 85721-86354 bp Feature: domain Description: pyrE Location: 85721 -86354 bp Feature: gene Location: 86657-87616 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 86792-87341 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 86792-87341 bp Feature: gene Location: 87662-88258 bp Feature: domain Description: slmA Location: 87668-88244 bp Feature: domain Description: slmA Location: 87668-88244 bp Feature: gene Location: 88365-88823 bp Feature: domain Description: dut Location: 88371-88818 bp Feature: domain Description: dut Location: 88371 -8881 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rph (PRK00173), pyrE (TIGR00336), RVT-Retrons, slmA (PRK09480), dut (TIGR00576)

Seq: JAALAE010000004.1 Escherichia coli strain M-S87-X3 NODE_4_length_358969_cov_89.8295, whole genome shotgun sequence (358969 bp)
Overview 1 RT 1: 161-2416 bp Neighborhood of RT #1 [161, 2436] IS285 RVT-GII PRK15434 Feature: gene Location: 161-919 bp Feature: domain Description: IS285 Location: 191-881 bp Feature: domain Description: IS2 85 Location: 191-881 bp Feature: gene Location: 968-1261 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1139-1247 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1139-12 47 bp Feature: gene Location: 1686-1934 bp Feature: gene Location: 1963-2436 bp Feature: domain Description: PRK15434 Location: 1966-2416 bp Feature: domain Description: PRK15434 Location: 1966-2 416 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IS285 (COG3328), PRK15434 (GDP-mannose mannosyl hydrolase), RVT-GII