myRT

myRT report for GCA_011077705.1_ASM1107770v1

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Seq: JAALBK010000034.1 Escherichia coli strain M-10194 NODE_34_length_44284_cov_30.3858, whole genome shotgun sequence (44284 bp)
Overview 1 RT 1: 698-5511 bp Neighborhood of RT #1 [698, 6227] RVT-UG1 GerD HEPN_Apea Feature: gene Location: 698-4387 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 1310-1820 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 1 31 0-1 820 bp Feature: gene Location: 4396-4830 bp Feature: domain Description: GerD Location: 4474-4588 bp Feature: domain Description: GerD Location: 4474-4588 bp Feature: gene Location: 5127-6227 bp Feature: domain Description: HEPN_Apea Location: 5196-5511 bp Feature: domain Description: HEPN_Apea Location: 51 96-551 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG1, GerD (pfam17898), HEPN_Apea (pfam18739)

Seq: JAALBK010000047.1 Escherichia coli strain M-10194 NODE_47_length_22957_cov_53.2437, whole genome shotgun sequence (22957 bp)
Overview 1 RT 1: 7567-10723 bp Neighborhood of RT #1 [7567, 10740] DDE_Tnp_IS1 InsA RVT-GII PRK10276 Feature: gene Location: 7567-7944 bp Feature: domain Description: DDE_Tnp_IS1 Location: 7570-7942 bp Feature: domain Description: DDE_Tnp_IS1 Location: 7570-7942 bp Feature: gene Location: 7989-8264 bp Feature: domain Description: InsA Location: 7992-8256 bp Feature: domain Description: InsA Location: 7992 -82 56 bp Feature: gene Location: 8416-9426 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8422-9034 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 842 2 -9034 bp Feature: gene Location: 9538-9903 bp Feature: gene Location: 10057-10740 bp Feature: domain Description: PRK10276 Location: 10360-10723 bp Feature: domain Description: PRK102 76 Location: 10360-1072 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS1 (pfam03400), InsA (COG3677), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit)

Seq: JAALBK010000053.1 Escherichia coli strain M-10194 NODE_53_length_18734_cov_33.6216, whole genome shotgun sequence (18734 bp)
Overview 1 RT 1: 12355-16337 bp Neighborhood of RT #1 [12355, 16363] Asparaginase_2 RVT-GII DcuC Feature: gene Location: 12355-13386 bp Feature: domain Description: Asparaginase_2 Location: 12445-13378 bp Feature: domain Description: Asparaginase_2 Location: 12445-13 3 78 bp Feature: gene Location: 13713-13862 bp Feature: gene Location: 13910-14356 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14216-14318 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14216-143 18 bp Feature: gene Location: 14578-14949 bp Feature: gene Location: 15002-16363 bp Feature: domain Description: DcuC Location: 15005-16337 bp Feature: domain Description: DcuC Location: 15005-163 3 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Asparaginase_2 (pfam01112), RVT-GII, DcuC (TIGR00771)

Seq: JAALBK010000061.1 Escherichia coli strain M-10194 NODE_61_length_13456_cov_26.6562, whole genome shotgun sequence (13456 bp)
Overview 1 RT 1: 9760-13455 bp Neighborhood of RT #1 [9760, 13454] InsE PHA02517 RVT-GII GIIM PHA02517 Tra8 Feature: gene Location: 9760-10062 bp Feature: domain Description: InsE Location: 9769-10051 bp Feature: domain Description: InsE Location: 9769-10051 bp Feature: gene Location: 10089-10514 bp Feature: domain Description: PHA02517 Location: 10113-10449 bp Feature: domain Description: PHA02517 Location: 10113-104 4 9 bp Feature: gene Location: 11106-12629 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11379-12111 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11379-12111 bp Feature: domain Description: GIIM Note: maturase Location: 12186-12384 bp Feature: domain Description: GIIM Note: maturase Location: 12186-12384 bp Feature: gene Location: 12794-13177 bp Feature: domain Description: PHA02517 Location: 12797-13172 bp Feature: domain Description: PHA02517 Location: 12797-13172 bp Feature: gene Location: 13248-13454 bp Feature: domain Description: Tra8 Location: 13251-13455 bp Feature: domain Description: Tra8 Location: 13251-134 55 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), Tra8 (COG2826)

Seq: JAALBK010000089.1 Escherichia coli strain M-10194 NODE_89_length_2344_cov_99.6581, whole genome shotgun sequence (2344 bp)
Overview 1 RT 1: 2-2227 bp Neighborhood of RT #1 [2, 2262] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 2-145 bp Feature: gene Location: 595-2262 bp Feature: domain Description: RVT_N Location: 643-880 bp Feature: domain Description: RVT_N Location: 643-880 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 931-1573 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 931-15 73 bp Feature: domain Description: GIIM Note: maturase Location: 1624-1858 bp Feature: domain Description: GIIM Note: maturase Location: 1624-185 8 bp Feature: domain Description: HNHc Note: nucleases Location: 2068-2227 bp Feature: domain Description: HNHc Note: nucleases Location: 2068-2227 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)