myRT

myRT report for GCA_011077855.1_ASM1107785v1

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Seq: JAALBS010000006.1 Escherichia coli strain M-28 NODE_6_length_287098_cov_74.4337, whole genome shotgun sequence (287098 bp)
Overview 1 RT 1: 275079-278045 bp Neighborhood of RT #1 [275079, 278242] SLATT_5 RVT-UG17 DUF4094 Peptidase_S74 Feature: gene Location: 275079-275219 bp Feature: gene Location: 275233-275775 bp Feature: domain Description: SLATT_5 Location: 275239-275755 bp Feature: domain Description: SLATT_5 Location: 275239-275755 bp Feature: gene Location: 275762-277132 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 275990-276596 bp Feature: RT Description: RVT-UG1 7 Note: UG1 7 RT Location: 275990-276596 bp Feature: gene Location: 277240-277527 bp Feature: gene Location: 277538-278242 bp Feature: domain Description: DUF4094 Location: 277580-277670 bp Feature: domain Description: DUF4094 Location: 277580-277670 bp Feature: domain Description: Peptidase_S74 Location: 277886-278045 bp Feature: domain Description: Peptidase_S74 Location: 277886-278045 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SLATT_5 (pfam18160), RVT-UG17, DUF4094 (pfam13334), Peptidase_S74 (pfam13884)

Seq: JAALBS010000007.1 Escherichia coli strain M-28 NODE_7_length_268762_cov_65.939, whole genome shotgun sequence (268762 bp)
Overview 1 RT 1: 51806-55747 bp Neighborhood of RT #1 [51806, 55747] RVT-Retrons Feature: gene Location: 51806-52045 bp Feature: gene Location: 52352-52528 bp Feature: gene Location: 52601-54373 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 52760-53378 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 52 760-53378 bp Feature: gene Location: 54395-54562 bp Feature: gene Location: 54608-55747 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons

Seq: JAALBS010000008.1 Escherichia coli strain M-28 NODE_8_length_233490_cov_72.962, whole genome shotgun sequence (233490 bp)
Overview 1 RT 1: 212964-218766 bp Neighborhood of RT #1 [212964, 218766] LacY_symp SacC RVT-GII GIIM PHA02517 Feature: gene Location: 212964-214241 bp Feature: domain Description: LacY_symp Location: 212979-214188 bp Feature: domain Description: LacY_symp Location: 212979-214188 bp Feature: gene Location: 214238-215668 bp Feature: domain Description: SacC Location: 214259-215660 bp Feature: domain Description: SacC Location: 214259-215660 bp Feature: gene Location: 216293-217816 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 216566-217298 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 216566-217298 bp Feature: domain Description: GIIM Note: maturase Location: 217373-217571 bp Feature: domain Description: GIIM Note: maturase Location: 2173 73 -217571 bp Feature: gene Location: 217981-218385 bp Feature: domain Description: PHA02517 Location: 217984-218374 bp Feature: domain Description: PHA02517 Location: 217984-2183 74 bp Feature: gene Location: 218560-218766 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LacY_symp (pfam01306), SacC (COG1621), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed)