myRT

myRT report for GCA_011078165.1_ASM1107816v1

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Seq: JAALCI010000064.1 Providencia sp. M-8 NODE_64_length_3544_cov_99.1373, whole genome shotgun sequence (3544 bp)
Overview 1 RT 1: 299-3109 bp Neighborhood of RT #1 [299, 3171] DUF932 RVT_N RVT-GII GIIM HNHc Feature: gene Location: 299-862 bp Feature: domain Description: DUF932 Location: 314-851 bp Feature: domain Description: DUF932 Location: 31 4-851 bp Feature: gene Location: 1176-1430 bp Feature: gene Location: 1471-3171 bp Feature: domain Description: RVT_N Location: 1525-1768 bp Feature: domain Description: RVT_N Location: 1 525-1 768 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1813-2449 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 81 3-2449 bp Feature: domain Description: GIIM Note: maturase Location: 2500-2734 bp Feature: domain Description: GIIM Note: maturase Location: 2500-2734 bp Feature: domain Description: HNHc Note: nucleases Location: 2968-3109 bp Feature: domain Description: HNHc Note: nucleases Location: 2968-31 09 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF932 (pfam06067), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: JAALCI010000008.1 Providencia sp. M-8 NODE_8_length_156539_cov_93.7759, whole genome shotgun sequence (156539 bp)
Overview 1 RT 1: 21643-30124 bp Neighborhood of RT #1 [21643, 30124] COG0610 DUF45 RVT-UG8 RVT-UG3 greB Feature: gene Location: 21643-24921 bp Feature: domain Description: COG0610 Location: 21673-24619 bp Feature: domain Description: COG0610 Location: 2 1673-2 4619 bp Feature: gene Location: 24924-25688 bp Feature: domain Description: DUF45 Location: 25029-25650 bp Feature: domain Description: DUF45 Location: 2 502 9-2 5650 bp Feature: gene Location: 25838-27775 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 26333-26774 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 2 6333-2 6774 bp Feature: gene Location: 27768-28949 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 28056-28518 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 2 8056-2 8518 bp Feature: gene Location: 29036-29512 bp Feature: domain Description: greB Location: 29045-29501 bp Feature: domain Description: greB Location: 2 9045-2 9501 bp Feature: gene Location: 29519-30124 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG0610 (Type I site-specific restriction-modification system, R (restriction) subunit and related helicases ), DUF45 (pfam01863), RVT-UG8, RVT-UG3, greB (TIGR01461)