myRT

myRT report for GCA_011087585.1_AcF84

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Seq: VJOT01000007.1 Neochlamydia sp. AcF84 AcF84_contig00007, whole genome shotgun sequence (3031 bp)
Overview 1 RT 1: 44-2000 bp Neighborhood of RT #1 [44, 2122] RVT-GII group_II_RT_mat DDE_Tnp_1_3 Feature: gene Location: 44-709 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 248-695 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 248-695 bp Feature: gene Location: 809-1294 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 815-1178 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 81 5-1 1 78 bp Feature: gene Location: 1688-2122 bp Feature: domain Description: DDE_Tnp_1_3 Location: 1691-2000 bp Feature: domain Description: DDE_Tnp_1 _3 Location: 1 691 -2000 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1_3 (pfam13612), RVT-GII, group_II_RT_mat (TIGR04416)

Seq: VJOT01000011.1 Neochlamydia sp. AcF84 AcF84_contig00011, whole genome shotgun sequence (2326 bp)
Overview 1 RT 1: 90-2324 bp Neighborhood of RT #1 [90, 2324] RVT-GII GIIM Feature: gene Location: 90-332 bp Feature: gene Location: 383-1633 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 587-1244 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 587-12 44 bp Feature: domain Description: GIIM Note: maturase Location: 1325-1547 bp Feature: domain Description: GIIM Note: maturase Location: 132 5-1547 bp Feature: gene Location: 2052-2324 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: VJOT01000012.1 Neochlamydia sp. AcF84 AcF84_contig00012, whole genome shotgun sequence (14349 bp)
Overview 1 RT 1: 44-2424 bp Neighborhood of RT #1 [44, 2525] RVT-GII GIIM YhhI ABC_tran_CTD Feature: gene Location: 44-1294 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 248-905 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 248-905 bp Feature: domain Description: GIIM Note: maturase Location: 986-1208 bp Feature: domain Description: GIIM Note: maturase Location: 986-1208 bp Feature: gene Location: 1306-1581 bp Feature: domain Description: YhhI Location: 1360-1510 bp Feature: domain Description: YhhI Location: 13 60-1510 bp Feature: gene Location: 2298-2525 bp Feature: domain Description: ABC_tran_CTD Location: 2316-2424 bp Feature: domain Description: ABC_tran_CTD Location: 23 16-2424 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YhhI (COG5433), ABC_tran_CTD (pfam16326), RVT-GII, GIIM (pfam08388)

Seq: VJOT01000025.1 Neochlamydia sp. AcF84 AcF84_contig00025, whole genome shotgun sequence (10433 bp)
Overview 1 RT 1: 4361-10340 bp Neighborhood of RT #1 [4361, 10432] KOG1941 NT_GlnE_GlnD_like COG2905 TPR_12 TPR_12 TPR_12 TPR_12 TPR_12 TPR_10 TPR_12 TPR_12 TPR_12 TPR_12 TPR_12 RVT-GII GIIM Feature: gene Location: 4361-8836 bp Feature: domain Description: KOG1941 Location: 4730-4994 bp Feature: domain Description: KOG194 1 Location: 4 730-4 994 bp Feature: domain Description: NT_GlnE_GlnD_like Location: 5021-5306 bp Feature: domain Description: NT_GlnE_GlnD_like Location: 5021-5306 bp Feature: domain Description: COG2905 Location: 5810-6080 bp Feature: domain Description: COG2905 Location: 5810-6080 bp Feature: domain Description: TPR_12 Location: 6281-6488 bp Feature: domain Description: TPR_12 Location: 6281-64 88 bp Feature: domain Description: TPR_12 Location: 6563-6707 bp Feature: domain Description: TPR_12 Location: 6563-6707 bp Feature: domain Description: TPR_12 Location: 6818-6995 bp Feature: domain Description: TPR_12 Location: 6818-6995 bp Feature: domain Description: TPR_12 Location: 7040-7247 bp Feature: domain Description: TPR_12 Location: 704 0-724 7 bp Feature: domain Description: TPR_12 Location: 7292-7499 bp Feature: domain Description: TPR_12 Location: 7292-74 99 bp Feature: domain Description: TPR_10 Location: 7538-7649 bp Feature: domain Description: TPR_10 Location: 7538-764 9 bp Feature: domain Description: TPR_12 Location: 7658-7874 bp Feature: domain Description: TPR_12 Location: 7658-7874 bp Feature: domain Description: TPR_12 Location: 7910-8126 bp Feature: domain Description: TPR_12 Location: 7910-8126 bp Feature: domain Description: TPR_12 Location: 8162-8357 bp Feature: domain Description: TPR_12 Location: 8162-8357 bp Feature: domain Description: TPR_12 Location: 8426-8630 bp Feature: domain Description: TPR_12 Location: 84 26-8630 bp Feature: domain Description: TPR_12 Location: 8666-8798 bp Feature: domain Description: TPR_12 Location: 8666-8798 bp Feature: gene Location: 8919-9179 bp Feature: gene Location: 9230-10432 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9386-10043 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9386-1004 3 bp Feature: domain Description: GIIM Note: maturase Location: 10124-10340 bp Feature: domain Description: GIIM Note: maturase Location: 10124 -1034 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KOG1941 (KOG1941, Acetylcholine receptor-associated protein of the synapse (rapsyn) ), NT_GlnE_GlnD_like (cd05401), COG2905 (Signal-transduction protein containing cAMP-binding, CBS, and nucleotidyltransferase domains ), TPR_12 (pfam13424), TPR_10 (pfam13374), RVT-GII, GIIM (pfam08388)

Seq: VJOT01000036.1 Neochlamydia sp. AcF84 AcF84_contig00036, whole genome shotgun sequence (2551 bp)
Overview 1 RT 1: 8-2418 bp Neighborhood of RT #1 [8, 2534] RVT-GII RVT-GII GIIM group_II_RT_mat Feature: gene Location: 8-148 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11-104 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11-104 bp Feature: gene Location: 644-1894 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 848-1505 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 848-15 05 bp Feature: domain Description: GIIM Note: maturase Location: 1586-1805 bp Feature: domain Description: GIIM Note: maturase Location: 15 86-1805 bp Feature: gene Location: 2049-2534 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 2055-2418 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 205 5 -2418 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT group_II_RT_mat (TIGR04416), RVT-GII, GIIM (pfam08388)

Seq: VJOT01000042.1 Neochlamydia sp. AcF84 AcF84_contig00042, whole genome shotgun sequence (19645 bp)
Overview 1 RT 1: 17331-19516 bp Neighborhood of RT #1 [17331, 19602] Transposase_mut rve_3 RVT-GII GIIM Feature: gene Location: 17331-17729 bp Feature: domain Description: Transposase_mut Location: 17343-17700 bp Feature: domain Description: Transposase_mut Location: 17343-17700 bp Feature: gene Location: 17972-18301 bp Feature: domain Description: rve_3 Location: 17999-18191 bp Feature: domain Description: rve_3 Location: 17999-18191 bp Feature: gene Location: 18352-19602 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18556-19213 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18556 -19213 bp Feature: domain Description: GIIM Note: maturase Location: 19294-19516 bp Feature: domain Description: GIIM Note: maturase Location: 19294-19516 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Transposase_mut (pfam00872), rve_3 (pfam13683), RVT-GII, GIIM (pfam08388)