myRT

myRT report for GCA_011088025.1_ASM1108802v1

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Seq: JAALKN010000054.1 Gammaproteobacteria bacterium isolate MH2_Bin3 NODE_1140_length_24198_cov_7.665907, whole genome shotgun sequence (24198 bp)
Overview 1 RT 1: 6015-11176 bp Neighborhood of RT #1 [6015, 11176] RraA tauD RVT-GII GIIM IAT_beta Feature: gene Location: 6015-6713 bp Feature: domain Description: RraA Location: 6081-6651 bp Feature: domain Description: RraA Location: 6081 -6651 bp Feature: gene Location: 7000-7848 bp Feature: domain Description: tauD Location: 7006-7828 bp Feature: domain Description: tauD Location: 7006-7828 bp Feature: gene Location: 8464-9258 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8467-8872 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8467-8872 bp Feature: domain Description: GIIM Note: maturase Location: 8953-9172 bp Feature: domain Description: GIIM Note: maturase Location: 8953-91 72 bp Feature: gene Location: 9525-10847 bp Feature: domain Description: IAT_beta Location: 9702-10272 bp Feature: domain Description: IAT_beta Location: 9702-1 0272 bp Feature: gene Location: 10934-11176 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RraA (COG0684), tauD (PRK09553), RVT-GII, GIIM (pfam08388), IAT_beta (pfam11924)

Seq: JAALKN010000063.1 Gammaproteobacteria bacterium isolate MH2_Bin3 NODE_1299_length_22291_cov_7.396024, whole genome shotgun sequence (22291 bp)
Overview 1 RT 1: 87-1200 bp Neighborhood of RT #1 [87, 2102] RVT-GII SufS_like Radical_SAM Feature: gene Location: 87-455 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 156-453 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 156-453 bp Feature: gene Location: 461-742 bp Feature: domain Description: SufS_like Location: 467-581 bp Feature: domain Description: SufS_like Location: 467-581 bp Feature: gene Location: 777-2102 bp Feature: domain Description: Radical_SAM Location: 885-1200 bp Feature: domain Description: Radical_SAM Location: 885-12 00 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, SufS_like (cd06453), Radical_SAM (pfam04055)

Seq: JAALKN010000016.1 Gammaproteobacteria bacterium isolate MH2_Bin3 NODE_478_length_38566_cov_7.692945, whole genome shotgun sequence (38566 bp)
Overview 1 RT 1: 11924-16307 bp Neighborhood of RT #1 [11924, 16324] Cas2_I_II_III Cas_Cas1 RVT-CRISPR Csx1_III-U Pentapeptide Pentapeptide Pentapeptide_3 Feature: gene Location: 11924-12292 bp Feature: domain Description: Cas2_I_II_III Location: 11960-12146 bp Feature: domain Description: Cas2_I_II_III Location: 11960-12146 bp Feature: gene Location: 12289-13302 bp Feature: domain Description: Cas_Cas1 Location: 12307-13147 bp Feature: domain Description: Cas_Cas1 Location: 123 07-13 147 bp Feature: gene Location: 13418-14116 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 13493-14093 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 13 493 -14093 bp Feature: gene Location: 14699-15892 bp Feature: domain Description: Csx1_III-U Location: 14774-15374 bp Feature: domain Description: Csx1_III-U Location: 14774-153 74 bp Feature: gene Location: 15992-16324 bp Feature: domain Description: Pentapeptide Location: 16010-16109 bp Feature: domain Description: Pentapeptide Location: 16010-16109 bp Feature: domain Description: Pentapeptide Location: 16124-16193 bp Feature: domain Description: Pentapeptide Location: 16124-16193 bp Feature: domain Description: Pentapeptide_3 Location: 16202-16307 bp Feature: domain Description: Pentapeptide_3 Location: 16202-163 07 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas2_I_II_III (cl11442), Cas_Cas1 (pfam01867), RVT-CRISPR, Csx1_III-U (cl21570), Pentapeptide (pfam00805), Pentapeptide_3 (pfam13576)

Seq: JAALKN010000172.1 Gammaproteobacteria bacterium isolate MH2_Bin3 NODE_5543_length_7297_cov_7.379039, whole genome shotgun sequence (7297 bp)
Overview 1 RT 1: 70-1368 bp Neighborhood of RT #1 [70, 1373] RVT-UG4 AdaB Feature: gene Location: 70-246 bp Feature: gene Location: 292-570 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 295-532 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 295-532 bp Feature: gene Location: 609-788 bp Feature: gene Location: 873-1373 bp Feature: domain Description: AdaB Location: 891-1368 bp Feature: domain Description: AdaB Location: 891-1368 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG4, AdaB (COG0350)

Seq: JAALKN010000176.1 Gammaproteobacteria bacterium isolate MH2_Bin3 NODE_5832_length_7011_cov_7.871909, whole genome shotgun sequence (7011 bp)
Overview 1 RT 1: 3182-5941 bp Neighborhood of RT #1 [3182, 5941] Cas2_I_II_III Cas_Cas1 RVT-CRISPR Feature: gene Location: 3182-3640 bp Feature: domain Description: Cas2_I_II_III Location: 3287-3485 bp Feature: domain Description: Cas2_I_II_III Location: 3287-3485 bp Feature: gene Location: 3624-4625 bp Feature: domain Description: Cas_Cas1 Location: 3633-4482 bp Feature: domain Description: Cas_Cas1 Location: 3633-4482 bp Feature: gene Location: 4618-5457 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 4828-5428 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 4828-5 428 bp Feature: gene Location: 5492-5698 bp Feature: gene Location: 5753-5941 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas2_I_II_III (cl11442), Cas_Cas1 (pfam01867), RVT-CRISPR