myRT

myRT report for GCA_011088265.1_ASM1108826v1

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Seq: JAALKB010000004.1 Gammaproteobacteria bacterium isolate MH1_Bin6 NODE_142_length_67870_cov_8.353904, whole genome shotgun sequence (67870 bp)
Overview 1 RT 1: 22752-27913 bp Neighborhood of RT #1 [22752, 27913] RraA tauD RVT-GII GIIM IAT_beta Feature: gene Location: 22752-23450 bp Feature: domain Description: RraA Location: 22818-23388 bp Feature: domain Description: RraA Location: 2281 8-23388 bp Feature: gene Location: 23737-24585 bp Feature: domain Description: tauD Location: 23743-24565 bp Feature: domain Description: tauD Location: 23743-24565 bp Feature: gene Location: 25201-25995 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25204-25609 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25204-25609 bp Feature: domain Description: GIIM Note: maturase Location: 25690-25915 bp Feature: domain Description: GIIM Note: maturase Location: 25690-2591 5 bp Feature: gene Location: 26262-27584 bp Feature: domain Description: IAT_beta Location: 26439-27009 bp Feature: domain Description: IAT_beta Location: 26439-27009 bp Feature: gene Location: 27671-27913 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RraA (COG0684), tauD (PRK09553), RVT-GII, GIIM (pfam08388), IAT_beta (pfam11924)

Seq: JAALKB010000093.1 Gammaproteobacteria bacterium isolate MH1_Bin6 NODE_1630_length_14709_cov_8.766617, whole genome shotgun sequence (14709 bp)
Overview 1 RT 1: 11818-14683 bp Neighborhood of RT #1 [11818, 14706] Pentapeptide Pentapeptide Pentapeptide_3 Csx1_III-U RVT-CRISPR Feature: gene Location: 11818-12150 bp Feature: domain Description: Pentapeptide Location: 11836-11935 bp Feature: domain Description: Pentapeptide Location: 11836-11935 bp Feature: domain Description: Pentapeptide Location: 11950-12019 bp Feature: domain Description: Pentapeptide Location: 11950-12 019 bp Feature: domain Description: Pentapeptide_3 Location: 12028-12133 bp Feature: domain Description: Pentapeptide_3 Location: 12 02 8-12 133 bp Feature: gene Location: 12250-13443 bp Feature: domain Description: Csx1_III-U Location: 12325-12925 bp Feature: domain Description: Csx1_III-U Location: 12 32 5-12 92 5 bp Feature: gene Location: 14026-14706 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 14083-14683 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 14083-14683 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Pentapeptide (pfam00805), Pentapeptide_3 (pfam13576), Csx1_III-U (cl21570), RVT-CRISPR

Seq: JAALKB010000107.1 Gammaproteobacteria bacterium isolate MH1_Bin6 NODE_1889_length_13035_cov_7.965331, whole genome shotgun sequence (13035 bp)
Overview 1 RT 1: 929-3724 bp Neighborhood of RT #1 [929, 3879] RVT-CRISPR Cas_Cas1 Cas2_I_II_III Feature: gene Location: 929-1063 bp Feature: gene Location: 1363-1569 bp Feature: gene Location: 1604-2443 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 1814-2414 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 1814-2414 bp Feature: gene Location: 2436-3437 bp Feature: domain Description: Cas_Cas1 Location: 2445-3294 bp Feature: domain Description: Cas_Cas1 Location: 2445-3 294 bp Feature: gene Location: 3421-3879 bp Feature: domain Description: Cas2_I_II_III Location: 3526-3724 bp Feature: domain Description: Cas2_I_II_III Location: 3 526-3 724 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR, Cas_Cas1 (pfam01867), Cas2_I_II_III (cl11442)

Seq: JAALKB010000024.1 Gammaproteobacteria bacterium isolate MH1_Bin6 NODE_630_length_29336_cov_13.028414, whole genome shotgun sequence (29336 bp)
Overview 1 RT 1: 27393-29302 bp Neighborhood of RT #1 [27393, 29334] HigB_toxin HigA RVT-GII SufS_like Feature: gene Location: 27393-27707 bp Feature: domain Description: HigB_toxin Location: 27474-27687 bp Feature: domain Description: HigB_toxin Location: 274 74 -27687 bp Feature: gene Location: 27748-28116 bp Feature: domain Description: HigA Location: 27754-28093 bp Feature: domain Description: HigA Location: 27754 -28093 bp Feature: gene Location: 28595-29176 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28877-29174 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28877-29174 bp Feature: gene Location: 29182-29334 bp Feature: domain Description: SufS_like Location: 29185-29302 bp Feature: domain Description: SufS_like Location: 29185-29302 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HigB_toxin (pfam09907), HigA (COG5499), RVT-GII, SufS_like (cd06453)