myRT

myRT report for GCA_011174915.1_ASM1117491v1

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Seq: PUJT01000010.1 Photorhabdus sp. RW14-46 RW_46_scf0010, whole genome shotgun sequence (167225 bp)
Overview 1 RT 1: 95452-98300 bp Neighborhood of RT #1 [95452, 98350] RVT-GII HTH_Tnp_1 Feature: gene Location: 95452-96072 bp Feature: gene Location: 96167-96325 bp Feature: gene Location: 96474-97316 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 96480-97173 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 96480-971 73 bp Feature: gene Location: 97401-97670 bp Feature: gene Location: 98162-98350 bp Feature: domain Description: HTH_Tnp_1 Location: 98171-98300 bp Feature: domain Description: HTH_Tnp_1 Location: 981 71 -98300 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HTH_Tnp_1 (pfam01527)

Seq: PUJT01000018.1 Photorhabdus sp. RW14-46 RW_46_scf0018, whole genome shotgun sequence (84632 bp)
Overview 1 RT 1: 23191-28578 bp Neighborhood of RT #1 [23191, 28578] COG3177 RVT_N RVT-GII RVT-GII GIIM Feature: gene Location: 23191-24540 bp Feature: domain Description: COG3177 Location: 23380-24496 bp Feature: domain Description: COG3177 Location: 2 3380-2 4496 bp Feature: gene Location: 24830-25051 bp Feature: gene Location: 25061-26062 bp Feature: RT Description: RVT_N Location: 25271-25511 bp Feature: RT Description: RVT_N Location: 2 52 71-2 5511 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25559-26036 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 5559-2 6036 bp Feature: gene Location: 26069-26200 bp Feature: gene Location: 26246-26443 bp Feature: gene Location: 26440-27849 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26794-27451 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 6794-2 7451 bp Feature: domain Description: GIIM Note: maturase Location: 27532-27751 bp Feature: domain Description: GIIM Note: maturase Location: 2 7532 -2 7751 bp Feature: gene Location: 28114-28251 bp Feature: gene Location: 28309-28578 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: PUJT01000028.1 Photorhabdus sp. RW14-46 RW_46_scf0028, whole genome shotgun sequence (60699 bp)
Overview 1 RT 1: 16139-18899 bp Neighborhood of RT #1 [16139, 18922] RVT-Retrons arc_metj Feature: gene Location: 16139-16327 bp Feature: gene Location: 16406-17068 bp Feature: gene Location: 17058-18239 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 17208-17784 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 17208-17784 bp Feature: gene Location: 18270-18473 bp Feature: gene Location: 18665-18922 bp Feature: domain Description: arc_metj Location: 18788-18899 bp Feature: domain Description: arc_metj Location: 18788-18899 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, arc_metj (LOAD_arc_metj)

Seq: PUJT01000029.1 Photorhabdus sp. RW14-46 RW_46_scf0029, whole genome shotgun sequence (58547 bp)
Overview 1 RT 1: 4193-8730 bp Neighborhood of RT #1 [4193, 8906] PRK09692 INT_P4_C RVT-Retrons COG3950 TIGR02646 Feature: gene Location: 4193-4348 bp Feature: gene Location: 4384-5349 bp Feature: domain Description: PRK09692 Location: 4411-4693 bp Feature: domain Description: PRK09692 Location: 4 4 11-4 693 bp Feature: domain Description: INT_P4_C Location: 4843-5323 bp Feature: domain Description: INT_P4 _C Location: 4 84 3-5323 bp Feature: gene Location: 5549-6601 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5768-6368 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5768-6368 bp Feature: gene Location: 6598-8259 bp Feature: domain Description: COG3950 Location: 6793-8215 bp Feature: domain Description: COG3950 Location: 6793-8215 bp Feature: gene Location: 8256-8906 bp Feature: domain Description: TIGR02646 Location: 8319-8730 bp Feature: domain Description: TIGR0264 6 Location: 8319-8730 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09692 (Integrase; provisional), INT_P4_C (cd00801), RVT-Retrons, COG3950 (Predicted ATP-binding protein involved in virulence ), TIGR02646 (TIGR02646 family protein)

Seq: PUJT01000035.1 Photorhabdus sp. RW14-46 RW_46_scf0035, whole genome shotgun sequence (49345 bp)
Overview 1 RT 1: 1-1836 bp Neighborhood of RT #1 [1, 1836] RVT-GII GIIM DUF4158 Feature: gene Location: 1-750 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 130-277 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 130-277 bp Feature: domain Description: GIIM Note: maturase Location: 328-562 bp Feature: domain Description: GIIM Note: maturase Location: 328-5 62 bp Feature: gene Location: 1119-1457 bp Feature: domain Description: DUF4158 Location: 1137-1452 bp Feature: domain Description: DUF415 8 Location: 1137-145 2 bp Feature: gene Location: 1477-1836 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4158 (pfam13700), RVT-GII, GIIM (pfam08388)

Seq: PUJT01000050.1 Photorhabdus sp. RW14-46 RW_46_scf0050, whole genome shotgun sequence (23779 bp)
Overview 1 RT 1: 15024-20078 bp Neighborhood of RT #1 [15024, 20113] HTH_29 PvdE RVT-GII KOG4768 DDE_Tnp_Tn3 Feature: gene Location: 15024-15452 bp Feature: domain Description: HTH_29 Location: 15120-15291 bp Feature: domain Description: HTH_29 Location: 15120-15291 bp Feature: gene Location: 15738-17381 bp Feature: domain Description: PvdE Location: 15765-17367 bp Feature: domain Description: PvdE Location: 1576 5-1736 7 bp Feature: gene Location: 17535-19013 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18000-18687 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18000-186 87 bp Feature: domain Description: KOG4768 Location: 18801-18912 bp Feature: domain Description: KOG476 8 Location: 18801-18912 bp Feature: gene Location: 18803-19291 bp Feature: gene Location: 19412-20113 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 19415-20078 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 19415-20078 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_29 (pfam13551), PvdE (COG4615), RVT-GII, KOG4768 (KOG4768, Mitochondrial mRNA maturase ), DDE_Tnp_Tn3 (pfam01526)

Seq: PUJT01000057.1 Photorhabdus sp. RW14-46 RW_46_scf0057, whole genome shotgun sequence (11298 bp)
Overview 1 RT 1: 3-1467 bp Neighborhood of RT #1 [3, 1467] RVT-GII GIIM TolC Feature: gene Location: 3-182 bp Feature: gene Location: 278-823 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 296-422 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 296-422 bp Feature: domain Description: GIIM Note: maturase Location: 503-704 bp Feature: domain Description: GIIM Note: maturase Location: 503-7 04 bp Feature: gene Location: 873-1310 bp Feature: domain Description: TolC Location: 906-1299 bp Feature: domain Description: TolC Location: 906-1299 bp Feature: gene Location: 1303-1467 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), TolC (COG1538)

Seq: PUJT01000077.1 Photorhabdus sp. RW14-46 RW_46_scf0077, whole genome shotgun sequence (3029 bp)
Overview 1 RT 1: 962-2947 bp Neighborhood of RT #1 [962, 2947] DDE_3 RVT-GII Feature: gene Location: 962-1492 bp Feature: domain Description: DDE_3 Location: 968-1295 bp Feature: domain Description: DDE_3 Location: 968 -1295 bp Feature: gene Location: 1455-1835 bp Feature: gene Location: 1832-2548 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2036-2522 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2036-2522 bp Feature: gene Location: 2555-2686 bp Feature: gene Location: 2732-2947 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, DDE_3 (pfam13358)

Seq: PUJT01000089.1 Photorhabdus sp. RW14-46 RW_46_scf0089, whole genome shotgun sequence (2072 bp)
Overview 1 RT 1: 447-1885 bp Neighborhood of RT #1 [447, 2070] YiaG COG4737 RVT-GII Feature: gene Location: 447-755 bp Feature: domain Description: YiaG Location: 462-747 bp Feature: domain Description: YiaG Location: 462-747 bp Feature: gene Location: 769-1155 bp Feature: domain Description: COG4737 Location: 772-1144 bp Feature: domain Description: COG4737 Location: 772-1144 bp Feature: gene Location: 1645-2070 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1648-1885 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1648-1885 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, YiaG (COG2944), COG4737 (Uncharacterized protein )