myRT

myRT report for GCA_011189495.1_ASM1118949v1

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Seq: PUJV01000023.1 Photorhabdus stackebrandtii strain DSM 23271 scaffold_0023, whole genome shotgun sequence (61485 bp)
Overview 1 RT 1: 112-6156 bp Neighborhood of RT #1 [112, 6203] RVT-GII Phage_int_SAM_4 INT_RitA_C_like INT_RitC_C_like RVT-GII COG3547 Feature: gene Location: 112-375 bp Feature: gene Location: 524-688 bp Feature: gene Location: 798-1259 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 801-1089 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 801 -1 089 bp Feature: gene Location: 1603-2664 bp Feature: domain Description: Phage_int_SAM_4 Location: 1786-2011 bp Feature: domain Description: Phage_int_SAM_4 Location: 1 786-201 1 bp Feature: domain Description: INT_RitA_C_like Location: 2107-2647 bp Feature: domain Description: INT_RitA_C_like Location: 21 07-2647 bp Feature: gene Location: 2664-2990 bp Feature: gene Location: 3070-3888 bp Feature: domain Description: INT_RitC_C_like Location: 3256-3808 bp Feature: domain Description: INT_RitC_C_like Location: 3256-3808 bp Feature: gene Location: 3972-4676 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4257-4647 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4257-4647 bp Feature: gene Location: 4920-5084 bp Feature: gene Location: 5172-6203 bp Feature: domain Description: COG3547 Location: 5190-6156 bp Feature: domain Description: COG3547 Location: 51 90-61 56 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Phage_int_SAM_4 (pfam13495), INT_RitA_C_like (cd01188), INT_RitC_C_like (cd01182), COG3547 (Transposase )

Seq: PUJV01000039.1 Photorhabdus stackebrandtii strain DSM 23271 scaffold_0039, whole genome shotgun sequence (24157 bp)
Overview 1 RT 1: 13543-15724 bp Neighborhood of RT #1 [13543, 15724] UvrD_C RVT-GII GIIM Feature: gene Location: 13543-13737 bp Feature: domain Description: UvrD_C Location: 13552-13660 bp Feature: domain Description: UvrD_C Location: 13552 -13660 bp Feature: gene Location: 13828-14154 bp Feature: gene Location: 14259-14858 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14262-14538 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 142 62 -14538 bp Feature: domain Description: GIIM Note: maturase Location: 14619-14817 bp Feature: domain Description: GIIM Note: maturase Location: 14619-14817 bp Feature: gene Location: 15274-15405 bp Feature: gene Location: 15557-15724 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT UvrD_C (pfam13361), RVT-GII, GIIM (pfam08388)

Seq: PUJV01000042.1 Photorhabdus stackebrandtii strain DSM 23271 scaffold_0042, whole genome shotgun sequence (18491 bp)
Overview 1 RT 1: 2425-5740 bp Neighborhood of RT #1 [2425, 5745] IS285 IS285 RVT-GII GIIM PulO PilS Feature: gene Location: 2425-3204 bp Feature: domain Description: IS285 Location: 2458-3154 bp Feature: domain Description: IS285 Location: 2458-3 154 bp Feature: gene Location: 3242-3634 bp Feature: domain Description: IS285 Location: 3248-3623 bp Feature: domain Description: IS285 Location: 3 248-3 623 bp Feature: gene Location: 3743-4456 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3770-3953 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 770-3 953 bp Feature: domain Description: GIIM Note: maturase Location: 4004-4238 bp Feature: domain Description: GIIM Note: maturase Location: 4004-423 8 bp Feature: gene Location: 4450-5142 bp Feature: domain Description: PulO Location: 4627-5083 bp Feature: domain Description: PulO Location: 4627-5083 bp Feature: gene Location: 5143-5745 bp Feature: domain Description: PilS Location: 5293-5740 bp Feature: domain Description: PilS Location: 5293 -5740 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IS285 (COG3328), RVT-GII, GIIM (pfam08388), PulO (COG1989), PilS (pfam08805)

Seq: PUJV01000046.1 Photorhabdus stackebrandtii strain DSM 23271 scaffold_0046, whole genome shotgun sequence (11887 bp)
Overview 1 RT 1: 7865-10475 bp Neighborhood of RT #1 [7865, 10475] INT_Cre_C RVT-GII Feature: gene Location: 7865-8074 bp Feature: gene Location: 8112-8813 bp Feature: domain Description: INT_Cre_C Location: 8574-8808 bp Feature: domain Description: INT_Cre_C Location: 8574 -8808 bp Feature: gene Location: 9300-9587 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9318-9579 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9318-9579 bp Feature: gene Location: 9758-9928 bp Feature: gene Location: 10125-10475 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_Cre_C (cd00799), RVT-GII

Seq: PUJV01000051.1 Photorhabdus stackebrandtii strain DSM 23271 scaffold_0051, whole genome shotgun sequence (8295 bp)
Overview 1 RT 1: 3-8105 bp Neighborhood of RT #1 [3, 8293] RVT-GII GIIM ExeA HTH_29 HTH_29 rve PinE RhsA PRK15386 RVT-GII GIIM Feature: gene Location: 3-677 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15-204 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15 -204 bp Feature: domain Description: GIIM Note: maturase Location: 255-489 bp Feature: domain Description: GIIM Note: maturase Location: 25 5 -489 bp Feature: gene Location: 941-1909 bp Feature: domain Description: ExeA Location: 944-1724 bp Feature: domain Description: ExeA Location: 944-1724 bp Feature: gene Location: 1899-3563 bp Feature: domain Description: HTH_29 Location: 1998-2064 bp Feature: domain Description: HTH_29 Location: 1998-2064 bp Feature: domain Description: HTH_29 Location: 2280-2331 bp Feature: domain Description: HTH_29 Location: 2280-2331 bp Feature: domain Description: rve Location: 2379-2793 bp Feature: domain Description: rve Location: 2379-2793 bp Feature: gene Location: 3547-4107 bp Feature: domain Description: PinE Location: 3550-4099 bp Feature: domain Description: PinE Location: 35 5 0-4099 bp Feature: gene Location: 4372-7236 bp Feature: domain Description: RhsA Location: 4378-6424 bp Feature: domain Description: RhsA Location: 4378-6424 bp Feature: domain Description: PRK15386 Location: 6877-7150 bp Feature: domain Description: PRK15 386 Location: 6877-715 0 bp Feature: gene Location: 7619-8293 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7631-7820 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7631-7820 bp Feature: domain Description: GIIM Note: maturase Location: 7871-8105 bp Feature: domain Description: GIIM Note: maturase Location: 7871-8105 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), ExeA (COG3267), HTH_29 (pfam13551), rve (pfam00665), PinE (COG1961), RhsA (COG3209), PRK15386 (type III secretion effector GogB)

Seq: PUJV01000055.1 Photorhabdus stackebrandtii strain DSM 23271 scaffold_0055, whole genome shotgun sequence (7315 bp)
Overview 1 RT 1: 5317-7219 bp Neighborhood of RT #1 [5317, 7233] PinE RVT-GII Feature: gene Location: 5317-5892 bp Feature: domain Description: PinE Location: 5320-5878 bp Feature: domain Description: PinE Location: 5320-5878 bp Feature: gene Location: 6065-6229 bp Feature: gene Location: 6436-7233 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6808-7219 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6 808-7219 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PinE (COG1961), RVT-GII

Seq: PUJV01000059.1 Photorhabdus stackebrandtii strain DSM 23271 scaffold_0059, whole genome shotgun sequence (6571 bp)
Overview 1 RT 1: 782-3895 bp Neighborhood of RT #1 [782, 3921] RVT-GII GIIM PinE Feature: gene Location: 782-1054 bp Feature: gene Location: 1103-1369 bp Feature: gene Location: 1506-2963 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1914-2601 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1914-2601 bp Feature: domain Description: GIIM Note: maturase Location: 2748-2886 bp Feature: domain Description: GIIM Note: maturase Location: 27 48-2886 bp Feature: gene Location: 2662-3339 bp Feature: gene Location: 3352-3921 bp Feature: domain Description: PinE Location: 3355-3895 bp Feature: domain Description: PinE Location: 3355-3895 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PinE (COG1961)

Seq: PUJV01000067.1 Photorhabdus stackebrandtii strain DSM 23271 scaffold_0067, whole genome shotgun sequence (5459 bp)
Overview 1 RT 1: 174-3664 bp Neighborhood of RT #1 [174, 3664] RVT-GII GIIM DDE_Tnp_Tn3 Feature: gene Location: 174-1604 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 567-1230 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 567-1230 bp Feature: domain Description: GIIM Note: maturase Location: 1299-1512 bp Feature: domain Description: GIIM Note: maturase Location: 1299-1512 bp Feature: gene Location: 2015-2629 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 2021-2561 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 2021-2561 bp Feature: gene Location: 2939-3664 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DDE_Tnp_Tn3 (pfam01526)

Seq: PUJV01000070.1 Photorhabdus stackebrandtii strain DSM 23271 scaffold_0070, whole genome shotgun sequence (5187 bp)
Overview 1 RT 1: 3-1530 bp Neighborhood of RT #1 [3, 1577] RVT-GII DUF1016_N YhcG_C Feature: gene Location: 3-209 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12-171 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12-171 bp Feature: gene Location: 368-511 bp Feature: gene Location: 531-1577 bp Feature: domain Description: DUF1016_N Location: 576-978 bp Feature: domain Description: DUF1016_N Location: 576-9 78 bp Feature: domain Description: YhcG_C Location: 1071-1530 bp Feature: domain Description: YhcG_C Location: 1071-1530 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, DUF1016_N (pfam17761), YhcG_C

Seq: PUJV01000098.1 Photorhabdus stackebrandtii strain DSM 23271 scaffold_0098, whole genome shotgun sequence (1913 bp)
Overview 1 RT 1: 171-1678 bp Neighborhood of RT #1 [171, 1812] RVT-GII KOG4768 Feature: gene Location: 171-335 bp Feature: gene Location: 382-1812 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 766-1453 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 766-1453 bp Feature: domain Description: KOG4768 Location: 1567-1678 bp Feature: domain Description: KOG4768 Location: 1567-1678 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, KOG4768 (KOG4768, Mitochondrial mRNA maturase )

Seq: PUJV01000099.1 Photorhabdus stackebrandtii strain DSM 23271 scaffold_0099, whole genome shotgun sequence (1911 bp)
Overview 1 RT 1: 146-1797 bp Neighborhood of RT #1 [146, 1829] RVT_N RVT-GII Feature: gene Location: 146-313 bp Feature: gene Location: 1080-1829 bp Feature: domain Description: RVT_N Location: 1128-1368 bp Feature: domain Description: RVT_N Location: 11 28-1368 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1416-1797 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1416-1797 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII

Seq: PUJV01000101.1 Photorhabdus stackebrandtii strain DSM 23271 scaffold_0101, whole genome shotgun sequence (1814 bp)
Overview 1 RT 1: 3-1674 bp Neighborhood of RT #1 [3, 1674] RVT-GII GIIM Feature: gene Location: 3-1349 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 333-951 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 333-951 bp Feature: domain Description: GIIM Note: maturase Location: 1002-1212 bp Feature: domain Description: GIIM Note: maturase Location: 1002-12 12 bp Feature: gene Location: 1465-1674 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: PUJV01000108.1 Photorhabdus stackebrandtii strain DSM 23271 scaffold_0108, whole genome shotgun sequence (1489 bp)
Overview 1 RT 1: 123-1395 bp Neighborhood of RT #1 [123, 1415] RVT-GII GIIM HNH DUF3085 Feature: gene Location: 123-1094 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 129-402 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 129-402 bp Feature: domain Description: GIIM Note: maturase Location: 453-687 bp Feature: domain Description: GIIM Note: maturase Location: 453-687 bp Feature: domain Description: HNH Note: nucleases Location: 927-1062 bp Feature: domain Description: HNH Note: nucleases Location: 927-1062 bp Feature: gene Location: 1182-1415 bp Feature: domain Description: DUF3085 Location: 1185-1395 bp Feature: domain Description: DUF3085 Location: 1185-13 95 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HNH (pfam01844), DUF3085 (pfam11284)

Seq: PUJV01000145.1 Photorhabdus stackebrandtii strain DSM 23271 scaffold_0145, whole genome shotgun sequence (889 bp)
Overview 1 RT 1: 2-889 bp Neighborhood of RT #1 [2, 888] RVT-GII Feature: gene Location: 2-178 bp Feature: gene Location: 382-888 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 766-889 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 766-889 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: PUJV01000160.1 Photorhabdus stackebrandtii strain DSM 23271 scaffold_0160, whole genome shotgun sequence (677 bp)
Overview 1 RT 1: 28-595 bp Neighborhood of RT #1 [28, 675] RVT-GII GIIM Feature: gene Location: 28-675 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31-298 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31-298 bp Feature: domain Description: GIIM Note: maturase Location: 379-595 bp Feature: domain Description: GIIM Note: maturase Location: 379-595 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: PUJV01000164.1 Photorhabdus stackebrandtii strain DSM 23271 scaffold_0164, whole genome shotgun sequence (643 bp)
Overview 1 RT 1: 3-639 bp Neighborhood of RT #1 [3, 641] RVT_N RVT-GII Feature: gene Location: 3-641 bp Feature: domain Description: RVT_N Location: 21-264 bp Feature: domain Description: RVT_N Location: 21-264 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 309-639 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 309-639 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII

Seq: PUJV01000173.1 Photorhabdus stackebrandtii strain DSM 23271 scaffold_0173, whole genome shotgun sequence (522 bp)
Overview 1 RT 1: 1-517 bp Neighborhood of RT #1 [1, 519] RVT-GII Feature: gene Location: 1-519 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-517 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-517 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: PUJV01000176.1 Photorhabdus stackebrandtii strain DSM 23271 scaffold_0176, whole genome shotgun sequence (465 bp)
Overview 1 RT 1: 112-283 bp Neighborhood of RT #1 [112, 462] RVT-GII Feature: gene Location: 112-462 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 121-283 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 121-283 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: PUJV01000177.1 Photorhabdus stackebrandtii strain DSM 23271 scaffold_0177, whole genome shotgun sequence (455 bp)
Overview 1 RT 1: 1-451 bp Neighborhood of RT #1 [1, 453] RVT-GII Feature: gene Location: 1-453 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 121-451 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 121-451 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: PUJV01000178.1 Photorhabdus stackebrandtii strain DSM 23271 scaffold_0178, whole genome shotgun sequence (449 bp)
Overview 1 RT 1: 3-312 bp Neighborhood of RT #1 [3, 446] RVT-GII Feature: gene Location: 3-134 bp Feature: gene Location: 171-446 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 174-312 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 174-312 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: PUJV01000187.1 Photorhabdus stackebrandtii strain DSM 23271 scaffold_0187, whole genome shotgun sequence (367 bp)
Overview 1 RT 1: 1-127 bp Neighborhood of RT #1 [1, 132] RVT-GII Feature: gene Location: 1-132 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-127 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-127 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: PUJV01000215.1 Photorhabdus stackebrandtii strain DSM 23271 scaffold_0215, whole genome shotgun sequence (252 bp)
Overview 1 RT 1: 2-236 bp Neighborhood of RT #1 [2, 250] RVT-GII Feature: gene Location: 2-250 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5-236 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5-236 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: PUJV01000224.1 Photorhabdus stackebrandtii strain DSM 23271 scaffold_0224, whole genome shotgun sequence (212 bp)
Overview 1 RT 1: 3-210 bp Neighborhood of RT #1 [3, 209] RVT-GII Feature: gene Location: 3-209 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-210 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-210 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII