myRT

myRT report for GCA_011189505.1_ASM1118950v1

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Seq: PUJU01000029.1 Photorhabdus tasmaniensis strain T327 scaffold_0029, whole genome shotgun sequence (62688 bp)
Overview 1 RT 1: 58932-62688 bp Neighborhood of RT #1 [58932, 62687] OmpV RVT_N RVT-GII GIIM HNHc Transposase_31 Feature: gene Location: 58932-59684 bp Feature: domain Description: OmpV Location: 58953-59682 bp Feature: domain Description: OmpV Location: 58953-59682 bp Feature: gene Location: 60065-60253 bp Feature: gene Location: 60566-62281 bp Feature: RT Description: RVT_N Location: 60620-60863 bp Feature: RT Description: RVT_N Location: 60620-60863 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 60908-61559 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 60908-61 559 bp Feature: domain Description: GIIM Note: maturase Location: 61610-61844 bp Feature: domain Description: GIIM Note: maturase Location: 61 61 0-61 844 bp Feature: domain Description: HNHc Note: nucleases Location: 62075-62222 bp Feature: domain Description: HNHc Note: nucleases Location: 62075-62222 bp Feature: gene Location: 62301-62687 bp Feature: domain Description: Transposase_31 Location: 62367-62688 bp Feature: domain Description: Transposase_31 Location: 62367-62688 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT OmpV (COG3713), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), Transposase_31 (pfam04754)

Seq: PUJU01000037.1 Photorhabdus tasmaniensis strain T327 scaffold_0037, whole genome shotgun sequence (47437 bp)
Overview 1 RT 1: 21089-27237 bp Neighborhood of RT #1 [21089, 27237] UvrD UvrD_C RVT-Retrons PRK09692 Feature: gene Location: 21089-22849 bp Feature: domain Description: UvrD Location: 21104-22016 bp Feature: domain Description: UvrD Location: 2 1104-2 2 016 bp Feature: domain Description: UvrD_C Location: 22451-22793 bp Feature: domain Description: UvrD_C Location: 2 2 451-2 2 793 bp Feature: gene Location: 23097-24350 bp Feature: gene Location: 24553-25713 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 24796-25444 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2 4796-2 5444 bp Feature: gene Location: 25875-27071 bp Feature: domain Description: PRK09692 Location: 25881-27039 bp Feature: domain Description: PRK09692 Location: 2 5881-2 7039 bp Feature: gene Location: 27091-27237 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT UvrD (COG0210), UvrD_C (pfam13361), RVT-Retrons, PRK09692 (Integrase; provisional)

Seq: PUJU01000105.1 Photorhabdus tasmaniensis strain T327 scaffold_0105, whole genome shotgun sequence (3694 bp)
Overview 1 RT 1: 524-3399 bp Neighborhood of RT #1 [524, 3479] RVT-GII KOG4768 Phage_int_SAM_4 INT_RitC_C_like Feature: gene Location: 524-1315 bp Feature: gene Location: 1708-1932 bp Feature: gene Location: 1938-2552 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2001-2310 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2001-23 10 bp Feature: domain Description: KOG4768 Location: 2424-2511 bp Feature: domain Description: KOG4768 Location: 2424-2511 bp Feature: gene Location: 2589-3479 bp Feature: domain Description: Phage_int_SAM_4 Location: 2646-2757 bp Feature: domain Description: Phage_int_SAM_4 Location: 2646-2757 bp Feature: domain Description: INT_RitC_C_like Location: 2847-3399 bp Feature: domain Description: INT_RitC_C_like Location: 2847-3 3 99 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, KOG4768 (KOG4768, Mitochondrial mRNA maturase ), Phage_int_SAM_4 (pfam13495), INT_RitC_C_like (cd01182)

Seq: PUJU01000144.1 Photorhabdus tasmaniensis strain T327 scaffold_0144, whole genome shotgun sequence (1558 bp)
Overview 1 RT 1: 3-1107 bp Neighborhood of RT #1 [3, 1484] RVT-GII Feature: gene Location: 3-1484 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 414-1107 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 14 -1107 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII