myRT

myRT report for GCA_011290775.2_ASM1129077v2

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Seq: JAANTC010000021.1 Escherichia coli strain Ec351 21, whole genome shotgun sequence (92252 bp)
Overview 1 RT 1: 47808-51690 bp Neighborhood of RT #1 [47808, 51695] dut slmA RVT-Retrons pyrE rph Feature: gene Location: 47808-48266 bp Feature: domain Description: dut Location: 47814-48261 bp Feature: domain Description: dut Location: 4781 4-48261 bp Feature: gene Location: 48373-48969 bp Feature: domain Description: slmA Location: 48379-48955 bp Feature: domain Description: slmA Location: 48379-48955 bp Feature: gene Location: 49015-49974 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 49150-49699 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 491 50-49699 bp Feature: gene Location: 50272-50928 bp Feature: domain Description: pyrE Location: 50290-50923 bp Feature: domain Description: pyrE Location: 50290-50923 bp Feature: gene Location: 50979-51695 bp Feature: domain Description: rph Location: 50982-51690 bp Feature: domain Description: rph Location: 50982-51 690 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT dut (TIGR00576), slmA (PRK09480), RVT-Retrons, pyrE (TIGR00336), rph (PRK00173)

Seq: JAANTC010000216.1 Escherichia coli strain Ec351 218, whole genome shotgun sequence (281 bp)
Overview 1 RT 1: 141-276 bp Neighborhood of RT #1 [141, 278] RVT-GII Feature: gene Location: 141-278 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 147-276 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 147-2 76 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: JAANTC010000061.1 Escherichia coli strain Ec351 62, whole genome shotgun sequence (17083 bp)
Overview 1 RT 1: 3-3873 bp Neighborhood of RT #1 [3, 3878] RVT-GII Intron_maturas2 HNHc PRK13732 DUF905 Feature: gene Location: 3-488 bp Feature: gene Location: 707-916 bp Feature: gene Location: 1051-2952 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1318-2149 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 18-2149 bp Feature: domain Description: Intron_maturas2 Location: 2263-2521 bp Feature: domain Description: Intron_maturas2 Location: 2263 -2521 bp Feature: domain Description: HNHc Note: nucleases Location: 2695-2857 bp Feature: domain Description: HNHc Note: nucleases Location: 2695-2857 bp Feature: gene Location: 3147-3587 bp Feature: domain Description: PRK13732 Location: 3153-3585 bp Feature: domain Description: PRK13 73 2 Location: 3 153 -3 585 bp Feature: gene Location: 3645-3878 bp Feature: domain Description: DUF905 Location: 3675-3873 bp Feature: domain Description: DUF905 Location: 3 675-3 873 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), PRK13732 (single-stranded DNA-binding protein; Provisional), DUF905 (pfam06006)

Seq: JAANTC010000078.1 Escherichia coli strain Ec351 80, whole genome shotgun sequence (7934 bp)
Overview 1 RT 1: 1792-5484 bp Neighborhood of RT #1 [1792, 5484] DUF1281 DUF1281_C RVT_N RVT-GII YkfC HNHc Feature: gene Location: 1792-2127 bp Feature: gene Location: 2222-3124 bp Feature: domain Description: DUF1281 Location: 2291-2819 bp Feature: domain Description: DUF1281 Location: 2291-2819 bp Feature: domain Description: DUF1281_C Location: 2825-3065 bp Feature: domain Description: DUF1281_C Location: 2825-3065 bp Feature: gene Location: 3201-4925 bp Feature: domain Description: RVT_N Location: 3258-3495 bp Feature: domain Description: RVT_N Location: 3258-34 95 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3546-4194 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 354 6-4 194 bp Feature: domain Description: YkfC Location: 4326-4482 bp Feature: domain Description: YkfC Location: 4 326-4 4 82 bp Feature: domain Description: HNHc Note: nucleases Location: 4710-4869 bp Feature: domain Description: HNHc Note: nucleases Location: 4 710-4 869 bp Feature: gene Location: 4966-5106 bp Feature: gene Location: 5188-5484 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1281 (pfam06924), DUF1281_C (pfam18406), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507)

Seq: JAANTC010000083.1 Escherichia coli strain Ec351 85, whole genome shotgun sequence (6534 bp)
Overview 1 RT 1: 3384-6402 bp Neighborhood of RT #1 [3384, 6402] DUF1380 RVT_N RVT-GII GIIM HNHc Feature: gene Location: 3384-3806 bp Feature: domain Description: DUF1380 Location: 3387-3681 bp Feature: domain Description: DUF1380 Location: 3387-3681 bp Feature: gene Location: 3858-4160 bp Feature: gene Location: 4273-5940 bp Feature: domain Description: RVT_N Location: 4321-4558 bp Feature: domain Description: RVT_N Location: 4321-45 5 8 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4609-5251 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4609-5 25 1 bp Feature: domain Description: GIIM Note: maturase Location: 5302-5536 bp Feature: domain Description: GIIM Note: maturase Location: 5 302-5 5 36 bp Feature: domain Description: HNHc Note: nucleases Location: 5746-5905 bp Feature: domain Description: HNHc Note: nucleases Location: 5 746-5 905 bp Feature: gene Location: 6220-6402 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1380 (pfam07128), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)