myRT

myRT report for GCA_011316145.1_ASM1131614v1

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Seq: MTRU01000188.1 Enterococcus faecium strain ERV118 contig_188, whole genome shotgun sequence (3259 bp)
Overview 1 RT 1: 1-3242 bp Neighborhood of RT #1 [1, 3256] RVT-AbiP2 HsdM Feature: gene Location: 1-1458 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 331-796 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 331 -796 bp Feature: gene Location: 1796-3256 bp Feature: domain Description: HsdM Location: 1817-3242 bp Feature: domain Description: HsdM Location: 1 81 7-3242 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-AbiP2, HsdM (COG0286)

Seq: MTRU01000442.1 Enterococcus faecium strain ERV118 contig_447, whole genome shotgun sequence (845 bp)
Overview 1 RT 1: 3-483 bp Neighborhood of RT #1 [3, 842] RVT-GII Feature: gene Location: 3-842 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-483 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-483 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: MTRU01000056.1 Enterococcus faecium strain ERV118 contig_56, whole genome shotgun sequence (74851 bp)
Overview 1 RT 1: 6195-11753 bp Neighborhood of RT #1 [6195, 11761] Dcm FtsK RVT-GII HNHc FtsK_SpoIIIE RelB_DinJ Feature: gene Location: 6195-7337 bp Feature: domain Description: Dcm Location: 6198-7311 bp Feature: domain Description: Dcm Location: 6198-73 11 bp Feature: gene Location: 7382-7762 bp Feature: domain Description: FtsK Location: 7397-7637 bp Feature: domain Description: FtsK Location: 73 97-763 7 bp Feature: gene Location: 7864-9738 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8230-8926 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 823 0-8926 bp Feature: domain Description: HNHc Note: nucleases Location: 9466-9625 bp Feature: domain Description: HNHc Note: nucleases Location: 9466-9625 bp Feature: gene Location: 10332-11363 bp Feature: domain Description: FtsK_SpoIIIE Location: 11004-11244 bp Feature: domain Description: FtsK_SpoIIIE Location: 11004-11244 bp Feature: gene Location: 11417-11761 bp Feature: domain Description: RelB_DinJ Location: 11627-11753 bp Feature: domain Description: RelB_DinJ Location: 11627-11753 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Dcm (COG0270), FtsK (COG1674), RVT-GII, HNHc (smart00507), FtsK_SpoIIIE (pfam01580), RelB_DinJ (TIGR02384)

Seq: MTRU01000091.1 Enterococcus faecium strain ERV118 contig_91, whole genome shotgun sequence (32094 bp)
Overview 1 RT 1: 5-5335 bp Neighborhood of RT #1 [5, 5406] AAA_10 RVT-GII AAA_10 TcpE Feature: gene Location: 5-823 bp Feature: domain Description: AAA_10 Location: 11-809 bp Feature: domain Description: AAA_10 Location: 11-809 bp Feature: gene Location: 957-2783 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1257-1956 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1257-1956 bp Feature: gene Location: 3480-5030 bp Feature: domain Description: AAA_10 Location: 4809-4992 bp Feature: domain Description: AAA_10 Location: 4 809-4 992 bp Feature: gene Location: 5017-5406 bp Feature: domain Description: TcpE Location: 5035-5335 bp Feature: domain Description: TcpE Location: 5035-5335 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_10 (pfam12846), RVT-GII, TcpE (pfam12648)