myRT

myRT report for GCA_011317135.1_ASM1131713v1

Download annotations/find similar RTs

Seq: WTVF01000020.1 Enterocloster aldensis strain MSK.1.13 NODE_20_length_98614_cov_127.807, whole genome shotgun sequence (98614 bp)
Overview 1 RT 1: 22245-26565 bp Neighborhood of RT #1 [22245, 26591] AcrR DltE RVT-Retrons AIM24 Cons_hypoth95 Feature: gene Location: 22245-22829 bp Feature: domain Description: AcrR Location: 22260-22629 bp Feature: domain Description: AcrR Location: 22260-22629 bp Feature: gene Location: 22993-23802 bp Feature: domain Description: DltE Location: 23026-23779 bp Feature: domain Description: DltE Location: 23026-23779 bp Feature: gene Location: 24125-25162 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 24332-24881 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 24332-24881 bp Feature: gene Location: 25218-25895 bp Feature: domain Description: AIM24 Location: 25221-25884 bp Feature: domain Description: AIM24 Location: 25221 -25884 bp Feature: gene Location: 26034-26591 bp Feature: domain Description: Cons_hypoth95 Location: 26037-26565 bp Feature: domain Description: Cons_hypoth95 Location: 26037-26565 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AcrR (COG1309), DltE (COG3967), RVT-Retrons, AIM24 (pfam01987), Cons_hypoth95 (pfam03602)

Seq: WTVF01000028.1 Enterocloster aldensis strain MSK.1.13 NODE_28_length_90931_cov_130.848, whole genome shotgun sequence (90931 bp)
Overview 1 RT 1: 79127-83760 bp Neighborhood of RT #1 [79127, 83846] RVT-GII RVT-GII GIIM RVT-GII GIIM RVT-GII RVT-GII FlxA Feature: gene Location: 79127-79321 bp Feature: gene Location: 79482-79622 bp Feature: gene Location: 79835-80221 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 80039-80219 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 80039-802 19 bp Feature: gene Location: 80288-81079 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 80291-80696 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 802 91-80696 bp Feature: domain Description: GIIM Note: maturase Location: 80777-80993 bp Feature: domain Description: GIIM Note: maturase Location: 80777-80993 bp Feature: gene Location: 81162-81806 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81168-81303 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81168-81303 bp Feature: domain Description: GIIM Note: maturase Location: 81357-81588 bp Feature: domain Description: GIIM Note: maturase Location: 81357-81588 bp Feature: gene Location: 82038-82397 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 82248-82392 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 82 2 48-82 392 bp Feature: gene Location: 82407-82640 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 82425-82632 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 82 42 5-82 632 bp Feature: gene Location: 82684-83058 bp Feature: gene Location: 83463-83846 bp Feature: domain Description: FlxA Location: 83514-83760 bp Feature: domain Description: FlxA Location: 83514-83760 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), FlxA (pfam14282)

Seq: WTVF01000037.1 Enterocloster aldensis strain MSK.1.13 NODE_37_length_54935_cov_186.973, whole genome shotgun sequence (54935 bp)
Overview 1 RT 1: 41548-48785 bp Neighborhood of RT #1 [41548, 48790] rumA rumA RVT-UG3 RVT-UG8 Ecl1 Ecl1 Ser_Recombinase Feature: gene Location: 41548-41808 bp Feature: gene Location: 41881-43407 bp Feature: domain Description: rumA Location: 41926-42553 bp Feature: domain Description: rumA Location: 41926-42553 bp Feature: domain Description: rumA Location: 42748-43378 bp Feature: domain Description: rumA Location: 42748-43 3 78 bp Feature: gene Location: 43722-45515 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 44517-44952 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 44517-44952 bp Feature: gene Location: 45746-47728 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 46262-46703 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 46262-46703 bp Feature: gene Location: 47793-48254 bp Feature: domain Description: Ecl1 Location: 48024-48102 bp Feature: domain Description: Ecl1 Location: 48024-48102 bp Feature: domain Description: Ecl1 Location: 48117-48192 bp Feature: domain Description: Ecl1 Location: 48117-48192 bp Feature: gene Location: 48638-48790 bp Feature: domain Description: Ser_Recombinase Location: 48653-48785 bp Feature: domain Description: Ser_Recombinase Location: 48653 -48785 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rumA (TIGR00479), RVT-UG3, RVT-UG8, Ecl1 (pfam12855), Ser_Recombinase (cl02788)

Seq: WTVF01000003.1 Enterocloster aldensis strain MSK.1.13 NODE_3_length_348132_cov_134.791, whole genome shotgun sequence (348132 bp)
Overview 1 RT 1: 52226-57140 bp Neighborhood of RT #1 [52226, 57250] DUF3801 VirD4 RVT-GII VirD4 Feature: gene Location: 52226-52702 bp Feature: domain Description: DUF3801 Location: 52289-52676 bp Feature: domain Description: DUF3801 Location: 52289-52676 bp Feature: gene Location: 52699-53517 bp Feature: domain Description: VirD4 Location: 52912-53455 bp Feature: domain Description: VirD4 Location: 52912-534 55 bp Feature: gene Location: 54143-56053 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54473-55217 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54 4 73-55217 bp Feature: gene Location: 56077-56232 bp Feature: gene Location: 56273-57250 bp Feature: domain Description: VirD4 Location: 56336-57140 bp Feature: domain Description: VirD4 Location: 56336-5714 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3801 (pfam12687), VirD4 (COG3505), RVT-GII