myRT

myRT report for GCA_011322795.1_ASM1132279v1

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Seq: DRLV01000129.1 TPA_asm: Gammaproteobacteria bacterium isolate HyVt-472 HyVt-472_k145_208119, whole genome shotgun sequence (3294 bp)
Overview 1 RT 1: 1-2947 bp Neighborhood of RT #1 [1, 2947] RVT_N RVT-GII GIIM Feature: gene Location: 1-330 bp Feature: gene Location: 513-2006 bp Feature: domain Description: RVT_N Location: 570-813 bp Feature: domain Description: RVT_N Location: 570-81 3 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 858-1479 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 858-1 479 bp Feature: domain Description: GIIM Note: maturase Location: 1542-1767 bp Feature: domain Description: GIIM Note: maturase Location: 1 542-1 767 bp Feature: gene Location: 2738-2947 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: DRLV01000183.1 TPA_asm: Gammaproteobacteria bacterium isolate HyVt-472 HyVt-472_k145_437912, whole genome shotgun sequence (7183 bp)
Overview 1 RT 1: 936-5987 bp Neighborhood of RT #1 [936, 6202] COG3943 RVT-UG9 PRK14975 cas4 DUF2779 Feature: gene Location: 936-1172 bp Feature: gene Location: 1174-1437 bp Feature: domain Description: COG3943 Location: 1192-1417 bp Feature: domain Description: COG3943 Location: 1192 -1417 bp Feature: gene Location: 1514-3154 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 1724-2357 bp Feature: RT Description: RVT-UG9 Note: UG9 RT Location: 172 4-2 357 bp Feature: gene Location: 3240-4691 bp Feature: domain Description: PRK14975 Location: 3540-4629 bp Feature: domain Description: PRK14975 Location: 3540-462 9 bp Feature: gene Location: 4784-6202 bp Feature: domain Description: cas4 Location: 4814-5249 bp Feature: domain Description: cas4 Location: 4814-52 49 bp Feature: domain Description: DUF2779 Location: 5621-5987 bp Feature: domain Description: DUF2 779 Location: 562 1-5987 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3943 (Uncharacterized conserved protein ), RVT-UG9, PRK14975 (bifunctional 3'-5' exonuclease/DNA polymerase; Provisional), cas4 (TIGR00372), DUF2779 (pfam11074)

Seq: DRLV01000188.1 TPA_asm: Gammaproteobacteria bacterium isolate HyVt-472 HyVt-472_k145_453420, whole genome shotgun sequence (11628 bp)
Overview 1 RT 1: 2-4138 bp Neighborhood of RT #1 [2, 4188] RVT-Retrons MTAN TPR_6 TPR_6 TPR_6 TPR_6 TPR_6 Feature: gene Location: 2-235 bp Feature: gene Location: 384-1598 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 762-1317 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 762-13 17 bp Feature: gene Location: 1607-2401 bp Feature: domain Description: MTAN Location: 1688-2342 bp Feature: domain Description: MTAN Location: 1688-23 42 bp Feature: gene Location: 2419-4188 bp Feature: domain Description: TPR_6 Location: 2512-2599 bp Feature: domain Description: TPR_6 Location: 2512-2599 bp Feature: domain Description: TPR_6 Location: 3325-3418 bp Feature: domain Description: TPR_6 Location: 3 3 25-3 418 bp Feature: domain Description: TPR_6 Location: 3436-3526 bp Feature: domain Description: TPR_6 Location: 3 43 6-3 526 bp Feature: domain Description: TPR_6 Location: 3949-4036 bp Feature: domain Description: TPR_6 Location: 3 949-403 6 bp Feature: domain Description: TPR_6 Location: 4054-4138 bp Feature: domain Description: TPR_6 Location: 4054-413 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, MTAN (cd09008), TPR_6 (pfam13174)

Seq: DRLV01000233.1 TPA_asm: Gammaproteobacteria bacterium isolate HyVt-472 HyVt-472_k145_591623, whole genome shotgun sequence (5997 bp)
Overview 1 RT 1: 2-3938 bp Neighborhood of RT #1 [2, 3938] RVT-Retrons Feature: gene Location: 2-580 bp Feature: gene Location: 924-1838 bp Feature: gene Location: 1841-2779 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1943-2531 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 194 3-2531 bp Feature: gene Location: 3075-3305 bp Feature: gene Location: 3465-3938 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons

Seq: DRLV01000248.1 TPA_asm: Gammaproteobacteria bacterium isolate HyVt-472 HyVt-472_k145_642081, whole genome shotgun sequence (2791 bp)
Overview 1 RT 1: 42-2747 bp Neighborhood of RT #1 [42, 2755] RVT-GII GIIM IS285 Feature: gene Location: 42-1352 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 243-858 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 243-85 8 bp Feature: domain Description: GIIM Note: maturase Location: 930-1143 bp Feature: domain Description: GIIM Note: maturase Location: 930-1143 bp Feature: gene Location: 1556-2755 bp Feature: domain Description: IS285 Location: 1619-2747 bp Feature: domain Description: IS285 Location: 1619-2747 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), IS285 (COG3328)