myRT

myRT report for GCA_011326825.1_ASM1132682v1

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Seq: JAAAEH010000034.1 Streptococcus agalactiae strain iGBS400 NODE_35_length_1720_cov_329.411, whole genome shotgun sequence (1720 bp)
Overview 1 RT 1: 3-1718 bp Neighborhood of RT #1 [3, 1718] GIIM GIIM RVT-GII Feature: gene Location: 3-296 bp Feature: domain Description: GIIM Note: maturase Location: 15-189 bp Feature: domain Description: GIIM Note: maturase Location: 1 5-1 89 bp Feature: domain Description: GIIM Note: maturase Location: 210-288 bp Feature: domain Description: GIIM Note: maturase Location: 21 0-288 bp Feature: gene Location: 308-1234 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 545-1160 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 545-1 1 60 bp Feature: gene Location: 1566-1718 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: JAAAEH010000003.1 Streptococcus agalactiae strain iGBS400 NODE_3_length_173981_cov_44.7524, whole genome shotgun sequence (173981 bp)
Overview 1 RT 1: 125449-135618 bp Neighborhood of RT #1 [125449, 135618] KOG1000 RVT-GII Intron_maturas2 HNHc N6_Mtase COG4646 Feature: gene Location: 125449-125748 bp Feature: gene Location: 125819-127162 bp Feature: domain Description: KOG1000 Location: 126098-126413 bp Feature: domain Description: KOG1000 Location: 12 6098-12 6413 bp Feature: gene Location: 127300-129078 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 127561-128353 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 7561-12 8353 bp Feature: domain Description: Intron_maturas2 Location: 128458-128689 bp Feature: domain Description: Intron_maturas2 Location: 12 8458-12 8689 bp Feature: domain Description: HNHc Note: nucleases Location: 128854-129040 bp Feature: domain Description: HNHc Note: nucleases Location: 12 8854-12 9040 bp Feature: gene Location: 129576-135017 bp Feature: domain Description: N6_Mtase Location: 131568-132159 bp Feature: domain Description: N6_Mtase Location: 131568-132 159 bp Feature: domain Description: COG4646 Location: 132753-134874 bp Feature: domain Description: COG4646 Location: 132 753-134874 bp Feature: gene Location: 135067-135618 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KOG1000 (KOG1000, Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily ), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class )