myRT

myRT report for GCA_011330975.1_ASM1133097v1

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Seq: DSSU01000223.1 TPA_asm: bacterium isolate SpSt-441 Ga0073934_10006359, whole genome shotgun sequence (17286 bp)
Overview 1 RT 1: 13896-16540 bp Neighborhood of RT #1 [13896, 17076] NT_KNTase_like RVT-GII Resolvase Zn_ribbon_recom Feature: gene Location: 13896-14039 bp Feature: gene Location: 14159-14692 bp Feature: domain Description: NT_KNTase_like Location: 14312-14600 bp Feature: domain Description: NT_KNTase_like Location: 1 431 2-1 4600 bp Feature: gene Location: 14699-15343 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14714-14948 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 471 4-1 4948 bp Feature: gene Location: 15742-17076 bp Feature: domain Description: Resolvase Location: 15757-16198 bp Feature: domain Description: Resolvase Location: 1 5757-1 61 98 bp Feature: domain Description: Zn_ribbon_recom Location: 16354-16540 bp Feature: domain Description: Zn_ribbon_recom Location: 1 6354-1 6540 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NT_KNTase_like (cd05403), RVT-GII, Resolvase (smart00857), Zn_ribbon_recom (pfam13408)

Seq: DSSU01000040.1 TPA_asm: bacterium isolate SpSt-441 Ga0073934_10010580, whole genome shotgun sequence (11427 bp)
Overview 1 RT 1: 3-4993 bp 2 RT 2: 7618-11369 bp Neighborhood of RT #1 [3, 5133] RVT-GII RVT-GII GIIM McrA RVT_N RVT-GII DEDD_Tnp_IS110 COG3547 Neighborhood of RT #2 [7618, 11425] KOG4768 RVT-GII RVT-GII GIIM HNHc Feature: gene Location: 3-392 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 258-393 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 58-393 bp Feature: gene Location: 551-811 bp Feature: gene Location: 1269-2321 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1272-1623 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 72 -162 3 bp Feature: domain Description: GIIM Note: maturase Location: 1722-1956 bp Feature: domain Description: GIIM Note: maturase Location: 172 2 -1956 bp Feature: domain Description: McrA Location: 2031-2319 bp Feature: domain Description: McrA Location: 2 031-2 319 bp Feature: gene Location: 2299-2973 bp Feature: domain Description: RVT_N Location: 2356-2602 bp Feature: domain Description: RVT_N Location: 2 356-2 602 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2644-2965 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 644-2 965 bp Feature: gene Location: 3009-3416 bp Feature: gene Location: 3724-5133 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 3838-4267 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 3838-42 67 bp Feature: domain Description: COG3547 Location: 4408-4993 bp Feature: domain Description: COG3547 Location: 4408-4993 bp Feature: gene Location: 7618-7755 bp Feature: gene Location: 7937-8587 bp Feature: domain Description: KOG4768 Location: 7970-8576 bp Feature: domain Description: KOG4768 Location: 7970-8576 bp Feature: gene Location: 8676-9731 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8937-9657 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8937-9657 bp Feature: gene Location: 10283-11425 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10286-10721 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 102 86-1072 1 bp Feature: domain Description: GIIM Note: maturase Location: 10775-11009 bp Feature: domain Description: GIIM Note: maturase Location: 10775-11009 bp Feature: domain Description: HNHc Note: nucleases Location: 11210-11369 bp Feature: domain Description: HNHc Note: nucleases Location: 112 10-11369 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), McrA (COG4058), RVT_N (pfam13655), DEDD_Tnp_IS110 (pfam01548), COG3547 (Transposase ), KOG4768 (KOG4768, Mitochondrial mRNA maturase ), HNHc (smart00507)