myRT

myRT report for GCA_011333675.1_ASM1133367v1

Download annotations/find similar RTs

Seq: DTKD01000029.1 TPA_asm: Armatimonadetes bacterium isolate SpSt-848 Ga0123519_10000055, whole genome shotgun sequence (171434 bp)
Overview 1 RT 1: 16084-20497 bp 2 RT 2: 111854-116678 bp Neighborhood of RT #1 [16084, 20532] PinE Zn_ribbon_recom RVT-GII GIIM DUF2924 Neighborhood of RT #2 [111854, 117085] couple_hipB RVT-Retrons Phage_portal_2 Phage_portal Feature: gene Location: 16084-16479 bp Feature: gene Location: 16488-17855 bp Feature: domain Description: PinE Location: 16509-17217 bp Feature: domain Description: PinE Location: 1 6509-1 721 7 bp Feature: domain Description: Zn_ribbon_recom Location: 17370-17553 bp Feature: domain Description: Zn_ribbon_recom Location: 1 7370-1 7553 bp Feature: gene Location: 17852-19480 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18158-18914 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 81 58-1 891 4 bp Feature: domain Description: GIIM Note: maturase Location: 18992-19223 bp Feature: domain Description: GIIM Note: maturase Location: 1 8992-1 9223 bp Feature: gene Location: 19501-19929 bp Feature: gene Location: 20065-20532 bp Feature: domain Description: DUF2924 Location: 20080-20497 bp Feature: domain Description: DUF2924 Location: 20080-20497 bp Feature: gene Location: 111854-112087 bp Feature: domain Description: couple_hipB Location: 111881-112046 bp Feature: domain Description: couple_hipB Location: 1 1 1 881 -1 1 2046 bp Feature: gene Location: 112325-113728 bp Feature: gene Location: 113729-114895 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 113957-114590 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 1 3957-1 1 4590 bp Feature: gene Location: 114932-115195 bp Feature: gene Location: 115625-117085 bp Feature: domain Description: Phage_portal_2 Location: 115715-115883 bp Feature: domain Description: Phage_portal_2 Location: 1 1 571 5-1 1 5883 bp Feature: domain Description: Phage_portal Location: 115892-116678 bp Feature: domain Description: Phage_portal Location: 1 1 5892-1 1 6678 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PinE (COG1961), Zn_ribbon_recom (pfam13408), RVT-GII, GIIM (pfam08388), DUF2924 (pfam11149), couple_hipB (TIGR03070), RVT-Retrons, Phage_portal_2 (pfam05136), Phage_portal (pfam04860)

Seq: DTKD01000012.1 TPA_asm: Armatimonadetes bacterium isolate SpSt-848 Ga0123519_10014592, whole genome shotgun sequence (11148 bp)
Overview 1 RT 1: 1-4032 bp Neighborhood of RT #1 [1, 4070] group_II_RT_mat RVT-UG19 Mrr_N Smf Feature: gene Location: 1-159 bp Feature: gene Location: 165-356 bp Feature: gene Location: 439-2523 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 583-739 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 583-739 bp Feature: RT Description: RVT-UG19 Note: UG19 RT Location: 811-1297 bp Feature: RT Description: RVT-UG19 Note: UG19 RT Location: 811-12 97 bp Feature: gene Location: 2626-3204 bp Feature: domain Description: Mrr_N Location: 2929-3187 bp Feature: domain Description: Mrr_N Location: 2 92 9-3187 bp Feature: gene Location: 3177-4070 bp Feature: domain Description: Smf Location: 3258-4032 bp Feature: domain Description: Smf Location: 32 58-4032 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT group_II_RT_mat (TIGR04416), RVT-UG19, Mrr_N (pfam14338), Smf (COG0758)