myRT

myRT report for GCA_011368445.1_ASM1136844v1

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Seq: SQQM01000029.1 Salmonella enterica subsp. enterica strain 392_13 NODE_29_length_66406_cov_20.5393_ID_57, whole genome shotgun sequence (66406 bp)
Overview 1 RT 1: 31914-36839 bp Neighborhood of RT #1 [31914, 36847] INT_P4_C RVT-Retrons PRK10473 Feature: gene Location: 31914-32636 bp Feature: domain Description: INT_P4_C Location: 32034-32565 bp Feature: domain Description: INT_P4_C Location: 32034-32565 bp Feature: gene Location: 32961-33923 bp Feature: gene Location: 33923-34858 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 34034-34619 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 34034-3461 9 bp Feature: gene Location: 35106-35315 bp Feature: gene Location: 35660-36847 bp Feature: domain Description: PRK10473 Location: 35663-36839 bp Feature: domain Description: PRK1 0473 Location: 35663-36839 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_P4_C (cd00801), RVT-Retrons, PRK10473 (MdtL family multidrug efflux MFS transporter)

Seq: SQQM01000060.1 Salmonella enterica subsp. enterica strain 392_13 NODE_60_length_7044_cov_12.4027_ID_119, whole genome shotgun sequence (7044 bp)
Overview 1 RT 1: 3-2581 bp Neighborhood of RT #1 [3, 2586] RVT-GII RVT-GII Intron_maturas2 HNHc PRK13732 DUF905 Feature: gene Location: 3-476 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9-363 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9-363 bp Feature: gene Location: 559-1566 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 568-763 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 568-763 bp Feature: domain Description: Intron_maturas2 Location: 877-1135 bp Feature: domain Description: Intron_maturas2 Location: 877-1135 bp Feature: domain Description: HNHc Note: nucleases Location: 1309-1471 bp Feature: domain Description: HNHc Note: nucleases Location: 1309-1471 bp Feature: gene Location: 1879-2283 bp Feature: domain Description: PRK13732 Location: 1888-2248 bp Feature: domain Description: PRK13732 Location: 1888-2 2 48 bp Feature: gene Location: 2350-2586 bp Feature: domain Description: DUF905 Location: 2383-2581 bp Feature: domain Description: DUF905 Location: 2 383-2 581 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13732 (single-stranded DNA-binding protein; Provisional), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF905 (pfam06006)