myRT

myRT report for GCA_011369445.1_ASM1136944v1

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Seq: DRQF01000016.1 TPA_asm: Planctomycetes bacterium isolate HyVt-576 HyVt-576_k145_1054690, whole genome shotgun sequence (27974 bp)
Overview 1 RT 1: 18603-25652 bp Neighborhood of RT #1 [18603, 25663] ALGX M28_Pgcp_like RVT-Retrons Lipase_GDSL_2 YchJ Feature: gene Location: 18603-20456 bp Feature: domain Description: ALGX Location: 18900-19668 bp Feature: domain Description: ALGX Location: 1 8900-1 9668 bp Feature: gene Location: 20557-22005 bp Feature: domain Description: M28_Pgcp_like Location: 20674-21982 bp Feature: domain Description: M28_Pgcp_like Location: 20674-21 982 bp Feature: gene Location: 22977-23723 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 22989-23433 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 22989-23433 bp Feature: gene Location: 23862-25175 bp Feature: domain Description: Lipase_GDSL_2 Location: 24456-24933 bp Feature: domain Description: Lipase_GDSL_2 Location: 24456-24933 bp Feature: gene Location: 25265-25663 bp Feature: domain Description: YchJ Location: 25268-25652 bp Feature: domain Description: YchJ Location: 25268-25652 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ALGX (pfam16822), M28_Pgcp_like (cd03883), RVT-Retrons, Lipase_GDSL_2 (pfam13472), YchJ (COG3012)

Seq: DRQF01000106.1 TPA_asm: Planctomycetes bacterium isolate HyVt-576 HyVt-576_k145_173289, whole genome shotgun sequence (2795 bp)
Overview 1 RT 1: 427-2468 bp Neighborhood of RT #1 [427, 2572] RVT-GII HTH_Tnp_1 Feature: gene Location: 427-1716 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 682-1366 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 682 -1366 bp Feature: gene Location: 1685-2050 bp Feature: gene Location: 2300-2572 bp Feature: domain Description: HTH_Tnp_1 Location: 2321-2468 bp Feature: domain Description: HTH_Tnp_1 Location: 2 32 1-2 468 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HTH_Tnp_1 (pfam01527)

Seq: DRQF01000269.1 TPA_asm: Planctomycetes bacterium isolate HyVt-576 HyVt-576_k145_913010, whole genome shotgun sequence (30723 bp)
Overview 1 RT 1: 1297-3679 bp Neighborhood of RT #1 [1297, 3732] COG5340 AbiEii RVT-GII DUF4926 Feature: gene Location: 1297-1899 bp Feature: domain Description: COG5340 Location: 1387-1813 bp Feature: domain Description: COG53 40 Location: 13 87-1813 bp Feature: gene Location: 1896-2828 bp Feature: domain Description: AbiEii Location: 2007-2598 bp Feature: domain Description: AbiEii Location: 2007-2598 bp Feature: gene Location: 2899-3270 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3004-3229 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 004-3 229 bp Feature: gene Location: 3329-3502 bp Feature: gene Location: 3499-3732 bp Feature: domain Description: DUF4926 Location: 3514-3679 bp Feature: domain Description: DUF4926 Location: 3 514-3 679 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG5340 (Transcriptional regulator, predicted component of viral defense system ), AbiEii (pfam08843), RVT-GII, DUF4926 (pfam16277)