myRT

myRT report for GCA_011378905.1_ASM1137890v1

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Seq: WTPY01000041.1 Paraglaciecola sp. 20A4 Scaffold41, whole genome shotgun sequence (37745 bp)
Overview 1 RT 1: 9725-13971 bp Neighborhood of RT #1 [9725, 14018] NHL_PAL_like NHL_PAL_like rve_2 RVT-GII GIIM PHA02517 Feature: gene Location: 9725-10852 bp Feature: domain Description: NHL_PAL_like Location: 9869-10109 bp Feature: domain Description: NHL_PAL_like Location: 9869-1 01 09 bp Feature: domain Description: NHL_PAL_like Location: 10187-10829 bp Feature: domain Description: NHL_PAL_like Location: 1 01 87-1 0829 bp Feature: gene Location: 11275-11484 bp Feature: domain Description: rve_2 Location: 11296-11461 bp Feature: domain Description: rve_2 Location: 1 1 296-1 1 461 bp Feature: gene Location: 11626-12795 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11824-12481 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 824-1 2481 bp Feature: domain Description: GIIM Note: maturase Location: 12562-12784 bp Feature: domain Description: GIIM Note: maturase Location: 1 2562-1 2784 bp Feature: gene Location: 12799-13152 bp Feature: gene Location: 13287-14018 bp Feature: domain Description: PHA02517 Location: 13353-13971 bp Feature: domain Description: PHA0251 7 Location: 1 3353-1 3971 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NHL_PAL_like (cd14958), rve_2 (pfam13333), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed)

Seq: WTPY01000054.1 Paraglaciecola sp. 20A4 Scaffold54, whole genome shotgun sequence (9800 bp)
Overview 1 RT 1: 1622-9493 bp Neighborhood of RT #1 [1622, 9546] AFD_CAR-like entF Lys2b PRK06196 RVT_N RVT-GII GIIM Crp Feature: gene Location: 1622-5206 bp Feature: domain Description: AFD_CAR-like Location: 1700-3497 bp Feature: domain Description: AFD_CAR-like Location: 1700-3497 bp Feature: domain Description: entF Location: 3629-3887 bp Feature: domain Description: entF Location: 362 9-3887 bp Feature: domain Description: Lys2b Location: 4010-5048 bp Feature: domain Description: Lys2 b Location: 4010-5048 bp Feature: gene Location: 5264-6250 bp Feature: domain Description: PRK06196 Location: 5270-6224 bp Feature: domain Description: PRK06196 Location: 52 70-62 2 4 bp Feature: gene Location: 6796-8241 bp Feature: domain Description: RVT_N Location: 6847-7090 bp Feature: domain Description: RVT_N Location: 6847-7090 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7135-7759 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7135-7759 bp Feature: domain Description: GIIM Note: maturase Location: 7810-8044 bp Feature: domain Description: GIIM Note: maturase Location: 7810-8044 bp Feature: gene Location: 8611-8760 bp Feature: gene Location: 8857-9546 bp Feature: domain Description: Crp Location: 8926-9493 bp Feature: domain Description: Crp Location: 892 6-9493 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AFD_CAR-like (cd17632), entF (PRK10252), Lys2b (COG3320), PRK06196 (oxidoreductase; Provisional), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), Crp (pfam00325)

Seq: WTPY01000057.1 Paraglaciecola sp. 20A4 Scaffold57, whole genome shotgun sequence (7283 bp)
Overview 1 RT 1: 1511-5985 bp Neighborhood of RT #1 [1511, 6026] TraS CRISPR_Cas6 RVT-CRISPR Cas1_I-II-III Cas2_I_II_III Cas2_I_II_III Feature: gene Location: 1511-2356 bp Feature: domain Description: TraS Location: 2087-2168 bp Feature: domain Description: TraS Location: 2087-2168 bp Feature: gene Location: 2456-3388 bp Feature: domain Description: CRISPR_Cas6 Location: 3008-3359 bp Feature: domain Description: CRISPR_Cas6 Location: 3 008-3 3 59 bp Feature: gene Location: 3434-5479 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 3608-4217 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 3 608-4217 bp Feature: domain Description: Cas1_I-II-III Location: 4478-5441 bp Feature: domain Description: Cas1_I-II-III Location: 4478-5441 bp Feature: gene Location: 5476-5751 bp Feature: domain Description: Cas2_I_II_III Location: 5488-5713 bp Feature: domain Description: Cas2_I_II_III Location: 5488-5713 bp Feature: gene Location: 5754-6026 bp Feature: domain Description: Cas2_I_II_III Location: 5766-5985 bp Feature: domain Description: Cas2_I_II_III Location: 5766-5985 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraS (pfam10624), CRISPR_Cas6 (pfam10040), RVT-CRISPR, Cas1_I-II-III (cl00656), Cas2_I_II_III (cl11442)

Seq: WTPY01000092.1 Paraglaciecola sp. 20A4 Scaffold93, whole genome shotgun sequence (713 bp)
Overview 1 RT 1: 121-706 bp Neighborhood of RT #1 [121, 711] RVT-GII Feature: gene Location: 121-711 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 376-706 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 376-706 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII