myRT

myRT report for GCA_011378975.1_ASM1137897v1

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Seq: WTLE01000021.1 Cellulophaga sp. Z1A5H Scaffold21, whole genome shotgun sequence (107111 bp)
Overview 1 RT 1: 86196-90627 bp Neighborhood of RT #1 [86196, 90627] PinE RVT-UG28 Feature: gene Location: 86196-86705 bp Feature: gene Location: 86838-87461 bp Feature: domain Description: PinE Location: 86880-87447 bp Feature: domain Description: PinE Location: 86880-87447 bp Feature: gene Location: 87881-89374 bp Feature: RT Description: RVT-UG28 Note: UG28 RT Location: 88160-88802 bp Feature: RT Description: RVT-UG28 Note: UG28 RT Location: 881 60-88802 bp Feature: gene Location: 89420-90349 bp Feature: gene Location: 90451-90627 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PinE (COG1961), RVT-UG28

Seq: WTLE01000026.1 Cellulophaga sp. Z1A5H Scaffold26, whole genome shotgun sequence (66093 bp)
Overview 1 RT 1: 3473-8722 bp Neighborhood of RT #1 [3473, 8778] GIIM RVT-GII Big_3 Big_3 Big_3 CBM_4_9 Feature: gene Location: 3473-4426 bp Feature: gene Location: 4700-5182 bp Feature: domain Description: GIIM Note: maturase Location: 4787-5003 bp Feature: domain Description: GIIM Note: maturase Location: 4787-5003 bp Feature: gene Location: 5246-5479 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5279-5474 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52 79-5474 bp Feature: gene Location: 5563-7032 bp Feature: gene Location: 7189-8778 bp Feature: domain Description: Big_3 Location: 7585-7693 bp Feature: domain Description: Big_3 Location: 7585-7693 bp Feature: domain Description: Big_3 Location: 7843-7948 bp Feature: domain Description: Big_3 Location: 7843-7948 bp Feature: domain Description: Big_3 Location: 8107-8317 bp Feature: domain Description: Big_3 Location: 8107-8317 bp Feature: domain Description: CBM_4_9 Location: 8332-8722 bp Feature: domain Description: CBM_4_9 Location: 8332 -872 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIIM (pfam08388), RVT-GII, Big_3 (pfam07523), CBM_4_9 (pfam02018)

Seq: WTLE01000005.1 Cellulophaga sp. Z1A5H Scaffold5, whole genome shotgun sequence (239069 bp)
Overview 1 RT 1: 169389-178438 bp Neighborhood of RT #1 [169389, 178438] WGR_DNA_ligase RVT-Retrons LRR_RI LRR_8 Feature: gene Location: 169389-172433 bp Feature: domain Description: WGR_DNA_ligase Location: 169407-169620 bp Feature: domain Description: WGR_DNA_ligase Location: 169407-169620 bp Feature: gene Location: 172423-174051 bp Feature: gene Location: 174308-175822 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 174857-175475 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 174857-175475 bp Feature: gene Location: 175931-177706 bp Feature: domain Description: LRR_RI Location: 175964-176537 bp Feature: domain Description: LRR_RI Location: 175964-17653 7 bp Feature: domain Description: LRR_8 Location: 176570-176705 bp Feature: domain Description: LRR_8 Location: 176570-176705 bp Feature: gene Location: 177941-178438 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT WGR_DNA_ligase (cd07998), RVT-Retrons, LRR_RI (smart00368), LRR_8 (pfam13855)

Seq: WTLE01000053.1 Cellulophaga sp. Z1A5H Scaffold53, whole genome shotgun sequence (5895 bp)
Overview 1 RT 1: 3-5894 bp Neighborhood of RT #1 [3, 5894] PRK06395 RVT-GII GIIM Feature: gene Location: 3-206 bp Feature: gene Location: 801-1010 bp Feature: domain Description: PRK06395 Location: 834-966 bp Feature: domain Description: PRK06395 Location: 834 -966 bp Feature: gene Location: 1680-2933 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1893-2550 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1893-2550 bp Feature: domain Description: GIIM Note: maturase Location: 2640-2838 bp Feature: domain Description: GIIM Note: maturase Location: 264 0-2838 bp Feature: gene Location: 3162-5444 bp Feature: gene Location: 5691-5894 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK06395 (phosphoribosylamine--glycine ligase; Provisional), RVT-GII, GIIM (pfam08388)