myRT

myRT report for GCA_011389755.1_ASM1138975v1

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Seq: JAABTR010000733.1 Deltaproteobacteria bacterium isolate S24.Bin071 Scaffold_445, whole genome shotgun sequence (3522 bp)
Overview 1 RT 1: 337-3390 bp Neighborhood of RT #1 [337, 3446] RVT-GII PA14 Hit Feature: gene Location: 337-1590 bp Feature: gene Location: 1593-2378 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1929-2094 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 929-2094 bp Feature: gene Location: 2589-2948 bp Feature: domain Description: PA14 Location: 2595-2931 bp Feature: domain Description: PA1 4 Location: 2595-2931 bp Feature: gene Location: 3033-3446 bp Feature: domain Description: Hit Location: 3036-3390 bp Feature: domain Description: Hit Location: 3036-3390 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PA14 (smart00758), Hit (COG0537)

Seq: JAABTR010000877.1 Deltaproteobacteria bacterium isolate S24.Bin071 Scaffold_583, whole genome shotgun sequence (2230 bp)
Overview 1 RT 1: 1-2188 bp Neighborhood of RT #1 [1, 2229] RVT-GII CAP_ED PleD ABC_MutS-like Feature: gene Location: 1-324 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 40-325 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 40-32 5 bp Feature: gene Location: 479-1462 bp Feature: domain Description: CAP_ED Location: 587-878 bp Feature: domain Description: CAP_ED Location: 587-878 bp Feature: domain Description: PleD Location: 905-1454 bp Feature: domain Description: PleD Location: 905-1454 bp Feature: gene Location: 1525-2229 bp Feature: domain Description: ABC_MutS-like Location: 1573-2188 bp Feature: domain Description: ABC_MutS-like Location: 1573-2 188 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, ABC_MutS-like (cd03283), CAP_ED (cl00047), PleD (COG3706)

Seq: JAABTR010000036.1 Deltaproteobacteria bacterium isolate S24.Bin071 Scaffold_8_4, whole genome shotgun sequence (7625 bp)
Overview 1 RT 1: 3-7623 bp Neighborhood of RT #1 [3, 7623] HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 HEAT_2 RVT-Retrons Feature: gene Location: 3-4628 bp Feature: domain Description: HEAT_2 Location: 96-339 bp Feature: domain Description: HEAT_2 Location: 96-3 3 9 bp Feature: domain Description: HEAT_2 Location: 393-567 bp Feature: domain Description: HEAT_2 Location: 3 93 -567 bp Feature: domain Description: HEAT_2 Location: 687-942 bp Feature: domain Description: HEAT_2 Location: 687-942 bp Feature: domain Description: HEAT_2 Location: 1185-1416 bp Feature: domain Description: HEAT_2 Location: 1185-1416 bp Feature: domain Description: HEAT_2 Location: 2322-2514 bp Feature: domain Description: HEAT_2 Location: 23 22-2514 bp Feature: domain Description: HEAT_2 Location: 3132-3309 bp Feature: domain Description: HEAT_2 Location: 3 13 2-3 3 09 bp Feature: domain Description: HEAT_2 Location: 3330-3549 bp Feature: domain Description: HEAT_2 Location: 3 3 3 0-3 549 bp Feature: gene Location: 4625-5758 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4880-5504 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4880-5504 bp Feature: gene Location: 6242-7090 bp Feature: gene Location: 7090-7623 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HEAT_2 (pfam13646), RVT-Retrons