myRT

myRT report for GCA_011389855.1_ASM1138985v1

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Seq: JAABTM010000115.1 Desulfobacteraceae bacterium isolate S23.Bin075 Scaffold_3263, whole genome shotgun sequence (13870 bp)
Overview 1 RT 1: 4555-8006 bp Neighborhood of RT #1 [4555, 8006] RNA_ligase RVT-GII Feature: gene Location: 4555-5298 bp Feature: domain Description: RNA_ligase Location: 4696-5155 bp Feature: domain Description: RNA_ligase Location: 4696-51 55 bp Feature: gene Location: 5576-5710 bp Feature: gene Location: 6230-6634 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6257-6506 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6257-6506 bp Feature: gene Location: 6737-7279 bp Feature: gene Location: 7689-8006 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RNA_ligase (pfam09414), RVT-GII

Seq: JAABTM010000480.1 Desulfobacteraceae bacterium isolate S23.Bin075 Scaffold_52867, whole genome shotgun sequence (3104 bp)
Overview 1 RT 1: 1-2853 bp Neighborhood of RT #1 [1, 2882] DUF1566 Avd_like DUF1566 RVT-DGRs MutS_I GxxExxY Feature: gene Location: 1-210 bp Feature: domain Description: DUF1566 Location: 4-199 bp Feature: domain Description: DUF1566 Location: 4-199 bp Feature: gene Location: 402-758 bp Feature: domain Description: Avd_like Location: 408-699 bp Feature: domain Description: Avd_like Location: 408-699 bp Feature: gene Location: 686-2389 bp Feature: domain Description: DUF1566 Location: 884-1007 bp Feature: domain Description: DUF1566 Location: 884-1007 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1031-1697 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1031-1697 bp Feature: domain Description: MutS_I Location: 2036-2261 bp Feature: domain Description: MutS_I Location: 2 036-2 2 61 bp Feature: gene Location: 2484-2882 bp Feature: domain Description: GxxExxY Location: 2511-2853 bp Feature: domain Description: GxxExxY Location: 2 511-2 853 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1566 (pfam07603), Avd_like (cd16376), RVT-DGRs, MutS_I (pfam01624), GxxExxY (TIGR04256)

Seq: JAABTM010000194.1 Desulfobacteraceae bacterium isolate S23.Bin075 Scaffold_5780, whole genome shotgun sequence (10142 bp)
Overview 1 RT 1: 576-4957 bp Neighborhood of RT #1 [576, 5073] PRK04164 RVT-CRISPR CRISPR_Cas2 Cas_Cas1 Feature: gene Location: 576-1136 bp Feature: domain Description: PRK04164 Location: 591-1077 bp Feature: domain Description: PRK04164 Location: 591-1077 bp Feature: gene Location: 1613-2422 bp Feature: gene Location: 2470-3345 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 2677-3277 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 2677-3 277 bp Feature: gene Location: 3655-3996 bp Feature: domain Description: CRISPR_Cas2 Location: 3658-3844 bp Feature: domain Description: CRISPR_Cas2 Location: 3 658-3 844 bp Feature: gene Location: 4102-5073 bp Feature: domain Description: Cas_Cas1 Location: 4150-4957 bp Feature: domain Description: Cas_Cas1 Location: 4150-4957 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK04164 (hypothetical protein; Provisional), RVT-CRISPR, CRISPR_Cas2 (pfam09827), Cas_Cas1 (pfam01867)

Seq: JAABTM010000022.1 Desulfobacteraceae bacterium isolate S23.Bin075 Scaffold_612, whole genome shotgun sequence (33812 bp)
Overview 1 RT 1: 1-4647 bp Neighborhood of RT #1 [1, 4647] PRK13557 DppC RVT-UG28 Feature: gene Location: 1-543 bp Feature: domain Description: PRK13557 Location: 10-541 bp Feature: domain Description: PRK13557 Location: 10-54 1 bp Feature: gene Location: 611-781 bp Feature: domain Description: DppC Location: 617-770 bp Feature: domain Description: DppC Location: 617-770 bp Feature: gene Location: 1057-2553 bp Feature: RT Description: RVT-UG28 Note: UG28 RT Location: 1345-1981 bp Feature: RT Description: RVT-UG28 Note: UG28 RT Location: 134 5-1981 bp Feature: gene Location: 2705-3184 bp Feature: gene Location: 4246-4647 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK13557 (histidine kinase; Provisional), DppC (COG1173), RVT-UG28