myRT

myRT report for GCA_011390365.1_ASM1139036v1

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Seq: JAABSM010000107.1 Gammaproteobacteria bacterium isolate S13.Bin138 NODE_107_length_12497_cov_28.8503, whole genome shotgun sequence (12497 bp)
Overview 1 RT 1: 460-3433 bp Neighborhood of RT #1 [460, 3606] RVT-GII NuoL NuoM Feature: gene Location: 460-966 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 463-634 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 463-634 bp Feature: gene Location: 1182-2858 bp Feature: domain Description: NuoL Location: 1206-2694 bp Feature: domain Description: NuoL Location: 1 206-2694 bp Feature: gene Location: 2863-3606 bp Feature: domain Description: NuoM Location: 3037-3433 bp Feature: domain Description: NuoM Location: 3037-3433 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, NuoL (COG1009), NuoM (COG1008)

Seq: JAABSM010000117.1 Gammaproteobacteria bacterium isolate S13.Bin138 NODE_117_length_10091_cov_20.2888, whole genome shotgun sequence (10091 bp)
Overview 1 RT 1: 640-7373 bp Neighborhood of RT #1 [640, 8422] Cas2_I_II_III CRISPR_Cas6 RVT-CRISPR Cas1_I-II-III RAMP_I_III cas_cyan_RAMP_2 Feature: gene Location: 640-810 bp Feature: gene Location: 1024-1302 bp Feature: domain Description: Cas2_I_II_III Location: 1036-1249 bp Feature: domain Description: Cas2 _I_II_III Location: 1036-12 49 bp Feature: gene Location: 1302-4268 bp Feature: domain Description: CRISPR_Cas6 Location: 1794-2181 bp Feature: domain Description: CRISPR_Cas6 Location: 1794-2 181 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 2484-3078 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 2 484-3078 bp Feature: domain Description: Cas1_I-II-III Location: 3312-4230 bp Feature: domain Description: Cas1_I-II-III Location: 3312 -42 30 bp Feature: gene Location: 4920-6632 bp Feature: gene Location: 6629-8422 bp Feature: domain Description: RAMP_I_III Location: 6713-6935 bp Feature: domain Description: RAMP_I_III Location: 6713-6935 bp Feature: domain Description: cas_cyan_RAMP_2 Location: 7253-7373 bp Feature: domain Description: cas_cyan_RAMP_2 Location: 72 53-7373 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Cas2_I_II_III (cl11442), CRISPR_Cas6 (pfam10040), RVT-CRISPR, Cas1_I-II-III (cl00656), RAMP_I_III (cl21471), cas_cyan_RAMP_2 (TIGR02674)

Seq: JAABSM010000036.1 Gammaproteobacteria bacterium isolate S13.Bin138 NODE_36_length_36159_cov_26.2357, whole genome shotgun sequence (36159 bp)
Overview 1 RT 1: 25773-32673 bp Neighborhood of RT #1 [25773, 32693] RHOD_1 Agmatinase-like_2 RVT-Retrons PBP2_FutA1_ilke FbpB Feature: gene Location: 25773-26198 bp Feature: domain Description: RHOD_1 Location: 25797-26172 bp Feature: domain Description: RHOD_1 Location: 25797-26172 bp Feature: gene Location: 26344-27417 bp Feature: domain Description: Agmatinase-like_2 Location: 26476-27385 bp Feature: domain Description: Agmatinase-like_2 Location: 26476-273 85 bp Feature: gene Location: 27817-29142 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 28279-28903 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 28279-28903 bp Feature: gene Location: 29539-30558 bp Feature: domain Description: PBP2_FutA1_ilke Location: 29614-30553 bp Feature: domain Description: PBP2_FutA1_ilke Location: 29614-3 0553 bp Feature: gene Location: 31050-32693 bp Feature: domain Description: FbpB Location: 31071-32673 bp Feature: domain Description: FbpB Location: 3 1071-3 2673 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RHOD_1 (cd01522), Agmatinase-like_2 (cd11593), RVT-Retrons, PBP2_FutA1_ilke (cd13542), FbpB (COG1178)